Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_06231 and RBAM_037620

See DNA alignment / Visit BSNT_06231 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:41
# Commandline: needle
#    -asequence pep-align/BSNT_06231___yybR.1.9828.seq
#    -bsequence pep-align/RBAM_037620___yybR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06231___yybR-RBAM_037620___yybR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06231___yybR-RBAM_037620___yybR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06231___yybR
# 2: RBAM_037620___yybR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 127
# Identity:     104/127 (81.9%)
# Similarity:   111/127 (87.4%)
# Gaps:           6/127 ( 4.7%)
# Score: 546.5
# 
#
#=======================================

BSNT_06231___      1 MSGKKNIYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICP     50
                         .||||||||||||.||.|||||||||||||||.|||||||||||||
RBAM_037620__      1 ----MNIYPNKEGCPVELTLSVIGGKWKGILFYHMIGGKKRFNEFRRICP     46

BSNT_06231___     51 SITQRMLTLQLRELEADGIVHREVYQQVPPKVEYSLTEFGRTLEPIVLQM    100
                     |||||||||||||||||||||||||||||||||||||||||:||||||||
RBAM_037620__     47 SITQRMLTLQLRELEADGIVHREVYQQVPPKVEYSLTEFGRSLEPIVLQM     96

BSNT_06231___    101 KEWGESNRDVLESYRSNGLLKDQ--QK    125
                     |:||::||:.||:||.....:||  ||
RBAM_037620__     97 KKWGDANREFLEAYREKTSPQDQSAQK    123


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.