Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_06180 and RBAM_037210

See DNA alignment / Visit BSNT_06180 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:38
# Commandline: needle
#    -asequence pep-align/BSNT_06180___yycN.1.9828.seq
#    -bsequence pep-align/RBAM_037210___yycN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06180___yycN-RBAM_037210___yycN.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06180___yycN-RBAM_037210___yycN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06180___yycN
# 2: RBAM_037210___yycN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 157
# Identity:     104/157 (66.2%)
# Similarity:   132/157 (84.1%)
# Gaps:           1/157 ( 0.6%)
# Score: 596.0
# 
#
#=======================================

BSNT_06180___      1 MTIMLTPMQSEEFRSYLTYTTKHYAEEKVKAGTWLPEDAQLLSKQAFTDL     50
                     |.|.|.||..:||:|||.::||||.|||||||||||::|..|::.||.||
RBAM_037210__      1 MAITLRPMTGQEFQSYLAHSTKHYGEEKVKAGTWLPDEAPELAELAFEDL     50

BSNT_06180___     51 LPRGLETPHHHLWSLKLNEKDTVGWLWIHAEPEHPQQEAFIYDFGLYEPY    100
                     ||.||||..|:||:|.|:.|:..||||:||:|:||||:||||||||:.|:
RBAM_037210__     51 LPDGLETADHYLWTLTLDGKENAGWLWLHADPDHPQQDAFIYDFGLHPPF    100

BSNT_06180___    101 RGKGYAKQALAALDHTARSMGIRKLSLHVFAHNQTARKLYEQTGFQETDV    150
                     |||||||:|||.|:..|:.:|:||:||||||||:|||||||:|||.||||
RBAM_037210__    101 RGKGYAKEALARLEDKAKDLGVRKISLHVFAHNETARKLYEKTGFLETDV    150

BSNT_06180___    151 VMSKKI-    156
                     :||||: 
RBAM_037210__    151 IMSKKLS    157


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.