Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_06116 and RBAM_036830

See DNA alignment / Visit BSNT_06116 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:36
# Commandline: needle
#    -asequence pep-align/BSNT_06116___yxcA.1.9828.seq
#    -bsequence pep-align/RBAM_036830___yxcA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06116___yxcA-RBAM_036830___yxcA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06116___yxcA-RBAM_036830___yxcA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06116___yxcA
# 2: RBAM_036830___yxcA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 83
# Identity:      46/83 (55.4%)
# Similarity:    59/83 (71.1%)
# Gaps:           1/83 ( 1.2%)
# Score: 241.0
# 
#
#=======================================

BSNT_06116___      1 MKVQHKKELKFYCFITIPSAFVVLTVISFLLQEITFPVTASAFLNASWHN     50
                     ||:|||||:.|||:.::|..||:.||||.|.|:||||:|....|:.|..|
RBAM_036830__      1 MKIQHKKEIAFYCYASVPMGFVIYTVISILFQDITFPLTVRNVLHESLRN     50

BSNT_06116___     51 LLFLIPFGLFFYPVHIWMKREFGRWNDTEKKRG     83
                     |..||.|.|||||.:||||:|||...:.| :||
RBAM_036830__     51 LGSLILFSLFFYPSYIWMKKEFGSRKEAE-RRG     82


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.