Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06116 and RBAM_036830

See Amino acid alignment / Visit BSNT_06116 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:36
# Commandline: needle
#    -asequence dna-align/BSNT_06116___yxcA.1.9828.seq
#    -bsequence dna-align/RBAM_036830___yxcA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06116___yxcA-RBAM_036830___yxcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06116___yxcA-RBAM_036830___yxcA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06116___yxcA
# 2: RBAM_036830___yxcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 277
# Identity:     179/277 (64.6%)
# Similarity:   179/277 (64.6%)
# Gaps:          53/277 (19.1%)
# Score: 555.5
# 
#
#=======================================

BSNT_06116___      1 TTGAAAGTACAGCATAAGAAGGAGCTCAAGTTTTATTGCTTTAT--CACG     48
                     |||||..|||||||||||||||||.|...|||||||||  ||||  ||..
RBAM_036830__      1 TTGAAGATACAGCATAAGAAGGAGATAGCGTTTTATTG--TTATGCCAGT     48

BSNT_06116___     49 ATTCC-ATCGGCGTTTGT--TGTGCTGACTGTCATCTCTTTTTTATTGCA     95
                     .|||| || ||..|||||  |.|.|  ||.||.||||||.||.||||.||
RBAM_036830__     49 GTTCCTAT-GGGATTTGTGATTTAC--ACCGTTATCTCTATTCTATTTCA     95

BSNT_06116___     96 AGAGATTACGTTTCCGGTGACTGCAAGCGCATTTCTGAATG--CTTCATG    143
                     .||.||.||.|||||..|.||||.|||         .||||  |||||||
RBAM_036830__     96 GGACATCACATTTCCTCTCACTGTAAG---------AAATGTTCTTCATG    136

BSNT_06116___    144 -------GCATAA---------TCTTTTGTTTTTGATACCGTTCGGTTTG    177
                            ||..||         ||||.|.||.||.|         |||||
RBAM_036830__    137 AGTCTTTGCGAAACTTGGGATCTCTTATCTTATTTA---------GTTTG    177

BSNT_06116___    178 TTTTTCTACCCGGTGCAT--ATATGGATGAAGCGGGAGTTTGGCCGCTGG    225
                     ||||||||||||  .|||  ||||||||||||..|||.||.|||.||.||
RBAM_036830__    178 TTTTTCTACCCG--TCATACATATGGATGAAGAAGGAATTCGGCAGCCGG    225

BSNT_06116___    226 AATGACACAGAAAAAAAGAGAGGATGA    252
                     ||.||   ||.|.|.|.||||||||||
RBAM_036830__    226 AAAGA---AGCAGAGAGGAGAGGATGA    249


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