Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05970 and RBAM_036130

See DNA alignment / Visit BSNT_05970 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:28
# Commandline: needle
#    -asequence pep-align/BSNT_05970___yxjB.1.9828.seq
#    -bsequence pep-align/RBAM_036130___yxjB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05970___yxjB-RBAM_036130___yxjB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05970___yxjB-RBAM_036130___yxjB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05970___yxjB
# 2: RBAM_036130___yxjB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 294
# Identity:     138/294 (46.9%)
# Similarity:   179/294 (60.9%)
# Gaps:          13/294 ( 4.4%)
# Score: 653.0
# 
#
#=======================================

BSNT_05970___      1 ----MKRTVDF-----SMFRCPLCDSSMDAASGKSLICTERGHTFDLSRH     41
                         .::..:.     |:||||||.|:|..:..:||||.: |||||:|:.
RBAM_036130__      1 MTSIKRKRAELLQSCQSVFRCPLCRSAMAVSQYRSLICGQ-GHTFDISKQ     49

BSNT_05970___     42 GYVNFLTKPVKTSYGAELFEARSRLIGECGFFDPLHEAIAELISHPTSGH     91
                     ||||||.|.|||.|..:|||||..|.....||.|:.:.||.:|:|..|..
RBAM_036130__     50 GYVNFLNKSVKTRYDRQLFEARRELFDSREFFGPVQKEIAAIITHIQSPQ     99

BSNT_05970___     92 EAFTILDSGCGEGSHLNALCGFDYAGKAAIGTGIDLSKDGILKASKAFKD    141
                     .:..:||:||||||||.|:|.:.....:..|.||||||:|:|.|:|||.|
RBAM_036130__    100 TSAAVLDAGCGEGSHLAAICKWLQPAFSVTGIGIDLSKEGVLHAAKAFGD    149

BSNT_05970___    142 QM-WAVADVARAPFHDRQFDVVLSIFSPSNYAEFHRLLKNDGMLVKVVPR    190
                     .| :||||||.|||.|..||||:|:.||.||.|..|||:..|.::|.|||
RBAM_036130__    150 HMVFAVADVADAPFADSCFDVVMSVLSPWNYKECSRLLRKGGTVIKAVPR    199

BSNT_05970___    191 SDYLIELRQFLYTDSPRRTYSNAAAVERFTANAAHSRPVRLRYVKTLDQQ    240
                     .|||.|:|:|.:.|||||..:..:|..||.|........||.|.|||.|.
RBAM_036130__    200 RDYLKEVREFFFGDSPRRNDTADSAAGRFQAGFQTFERKRLCYTKTLAQP    249

BSNT_05970___    241 AIHWLLKMTPLAWSAPKDRVSFLKEMKTADITVDVDILIGMK--    282
                     .:..|:|||||.|....|.:......|.|.:|:|:|||||..  
RBAM_036130__    250 DLERLVKMTPLTWKCTDDSIQRFISQKEAAVTIDIDILIGTDPL    293


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.