Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05970 and RBAM_036130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:28
# Commandline: needle
# -asequence dna-align/BSNT_05970___yxjB.1.9828.seq
# -bsequence dna-align/RBAM_036130___yxjB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05970___yxjB-RBAM_036130___yxjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05970___yxjB-RBAM_036130___yxjB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05970___yxjB
# 2: RBAM_036130___yxjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1024
# Identity: 530/1024 (51.8%)
# Similarity: 530/1024 (51.8%)
# Gaps: 317/1024 (31.0%)
# Score: 1317.0
#
#
#=======================================
BSNT_05970___ 1 --------------ATGAA-----GCGAACAGTTGATTTCAGCA------ 25
|.||| |||.| |||.|.|||
RBAM_036130__ 1 TTGACGTCTATAAAAAGAAAACGCGCGGA------ATTACTGCAATCATG 44
BSNT_05970___ 26 --------TGTTTCGATGCCCGCTCTGCGATTCTTCTATGGATGCGGCAT 67
||||..|.||.|||||.|||...||..|.||| ||||..|
RBAM_036130__ 45 CCAGTCCGTGTTCAGGTGTCCGCTATGCCGGTCGGCCATG---GCGGTCT 91
BSNT_05970___ 68 CAGGGAA-----AAGCTTGATTT--GTACAGAACGAGGACATACATTTGA 110
|| .|| ||||||||||| |.|||| ||.|||||||||||
RBAM_036130__ 92 CA--CAATACCGAAGCTTGATTTGCGGACAG-----GGGCATACATTTGA 134
BSNT_05970___ 111 TCTATCTCGGCACGGCTACGTGAACTTTCTGACGAAGCCGGTCAAAACCA 160
|.||||....||.||.||.|||||.||.||.|..||..|||||||||||.
RBAM_036130__ 135 TATATCAAAACAAGGATATGTGAATTTCCTCAATAAATCGGTCAAAACCC 184
BSNT_05970___ 161 GTTACGGTGCTG------AGCTTTTTGAAGCGAGGAGCAGGCTGATTG-- 202
|.|| || ||||.||.||||||||..||..|||..|||
RBAM_036130__ 185 GCTA------TGACAGACAGCTGTTCGAAGCGAGACGCGAGCTTTTTGAC 228
BSNT_05970___ 203 ----GAGAATGTGGTTTTTTTGACCCGCTCCATGAGGCGATTGCAGAACT 248
|.||| |||||||..|||.|.||..|||.|||.||.|...|
RBAM_036130__ 229 AGCCGGGAA------TTTTTTGGGCCGGTTCAAAAGGAGATCGCCGCCAT 272
BSNT_05970___ 249 CATCAGTCATCCCACATCTGGTCATGAGGCATTT-----ACCATC----- 288
||||| ||||.|| ||| ||.| |.||||
RBAM_036130__ 273 CATCA-----CCCATAT----TCA------ATCTCCGCAAACATCAGCGG 307
BSNT_05970___ 289 -----CTGGACAGC-GGTTGCGGTGAGGGTTCTCATTTGAATGCGCTTTG 332
.|||| .|| ||.|||||.||.||.|||||||| |..|||
RBAM_036130__ 308 CGGTATTGGA-TGCGGGGTGCGGAGAAGGGTCTCATTT--AGCCGC---- 350
BSNT_05970___ 333 CGGGTTTGATTATGCAGGGAAAG----CAGC-------------GATAGG 365
..|||||| ||.| |||| ||..||
RBAM_036130__ 351 --------CATATGCA---AATGGCTTCAGCCCGCTTTTTCCGTGACGGG 389
BSNT_05970___ 366 AACCGGCATAGATCTTTCGAAGGATGGGATCTTAAAAGCTTCTAAGGCAT 415
||.||||||.|||||.|||||.||.||..|..|..|.||..|.|||||.|
RBAM_036130__ 390 AATCGGCATTGATCTCTCGAAAGAAGGTGTGCTGCATGCCGCAAAGGCCT 439
BSNT_05970___ 416 TCAAAGATCAGATG---TGGGCGGTTGCCGATGTGGCGCGTGCTCCTTTT 462
||...|||||.||| |..||.||.||.|||||||||..|||.||.|||
RBAM_036130__ 440 TCGGGGATCATATGGTTTTTGCCGTCGCTGATGTGGCGGATGCGCCGTTT 489
BSNT_05970___ 463 CATGATCGCCAA-------TTTGATGTTGTGCTGTCTATTTTTTCGCCGT 505
|||.| ||||||||.|||.|||||.||||.||.||.|
RBAM_036130__ 490 -------GCCGACAGCTGTTTTGATGTCGTGATGTCTGTTTTATCACCTT 532
BSNT_05970___ 506 CCAATT-------ATGCAGAGTTTCATAGACTGCT--GAAGAATGATGGC 546
..|||| |||||| .|||||..| || ||.|..|||
RBAM_036130__ 533 GGAATTACAAGGAATGCAG-------CAGACTTTTACGA--AAGGGCGGC 573
BSNT_05970___ 547 ATGCTCGTAAAAGTAGTGCCGCGAAGCGACTATTTAATAGAATTAAGGCA 596
|...||.|.||||..||||||||..|.||.|||||.|..|||.|||||.|
RBAM_036130__ 574 ACAGTCATTAAAGCGGTGCCGCGGCGTGATTATTTGAAGGAAGTAAGGGA 623
BSNT_05970___ 597 ATTTTTAT---------------------AT------ACTGATTCACCAA 619
|||.||.| || .|.|||||..|
RBAM_036130__ 624 ATTCTTCTTCGGAGACAGCCCTCGGCGGAATGACACCGCCGATTCTGC-- 671
BSNT_05970___ 620 GGC-GCACGTATTCCAATGCGGCAGCTGTTGAGCGTTTTACAGCAAATGC 668
||| |.||| ||||||| |||| |||.|..|.|.|||.|..|||||.|
RBAM_036130__ 672 GGCGGGACG-ATTCCAA-GCGG--GCTTTCAAACCTTTGAGCGCAAACG- 716
BSNT_05970___ 669 TGCACACAGCCGTCCTGTCAGGCTGCGCTATGTT-----AAAAC------ 707
|||.|||| ||.||
RBAM_036130__ 717 --------------------------GCTGTGTTACACGAAGACCTTAGC 740
BSNT_05970___ 708 ---GCTTGACCAGCAGGCGATCCACTGGCTTCTCAAGATGACGCCGCTT- 753
||.||||| ||.|..|||||.|.||.|||||||| |||
RBAM_036130__ 741 GCAGCCTGACC---------TCGAGCGGCTTGTGAAAATGACGCC-CTTA 780
BSNT_05970___ 754 -----------GCCTGGTCGGCGCCGAAAG-ATCGAG-------TCAGCT 784
..|||.| ||.|| |||.|| ||||
RBAM_036130__ 781 ACATGGAAATGTACTGAT-------GACAGCATCCAGCGGTTTATCAG-- 821
BSNT_05970___ 785 TCCTGAAAGAGATGAAAACAGCCGATATTACGGTTGATGTTGATATCCTA 834
||.||||||| ||.|.|.|.|||.|.|||.|.|||||..||
RBAM_036130__ 822 -CCAGAAAGAG---------GCTGCTGTCACGATAGATATCGATATTTTA 861
BSNT_05970___ 835 ATAGGAA---------TGAAATGA 849
||.|||| ||.||
RBAM_036130__ 862 ATCGGAACCGATCCGCTGTAA--- 882
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