Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05970 and RBAM_036130

See Amino acid alignment / Visit BSNT_05970 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:28
# Commandline: needle
#    -asequence dna-align/BSNT_05970___yxjB.1.9828.seq
#    -bsequence dna-align/RBAM_036130___yxjB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05970___yxjB-RBAM_036130___yxjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05970___yxjB-RBAM_036130___yxjB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05970___yxjB
# 2: RBAM_036130___yxjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1024
# Identity:     530/1024 (51.8%)
# Similarity:   530/1024 (51.8%)
# Gaps:         317/1024 (31.0%)
# Score: 1317.0
# 
#
#=======================================

BSNT_05970___      1 --------------ATGAA-----GCGAACAGTTGATTTCAGCA------     25
                                   |.|||     |||.|      |||.|.|||      
RBAM_036130__      1 TTGACGTCTATAAAAAGAAAACGCGCGGA------ATTACTGCAATCATG     44

BSNT_05970___     26 --------TGTTTCGATGCCCGCTCTGCGATTCTTCTATGGATGCGGCAT     67
                             ||||..|.||.|||||.|||...||..|.|||   ||||..|
RBAM_036130__     45 CCAGTCCGTGTTCAGGTGTCCGCTATGCCGGTCGGCCATG---GCGGTCT     91

BSNT_05970___     68 CAGGGAA-----AAGCTTGATTT--GTACAGAACGAGGACATACATTTGA    110
                     ||  .||     |||||||||||  |.||||     ||.|||||||||||
RBAM_036130__     92 CA--CAATACCGAAGCTTGATTTGCGGACAG-----GGGCATACATTTGA    134

BSNT_05970___    111 TCTATCTCGGCACGGCTACGTGAACTTTCTGACGAAGCCGGTCAAAACCA    160
                     |.||||....||.||.||.|||||.||.||.|..||..|||||||||||.
RBAM_036130__    135 TATATCAAAACAAGGATATGTGAATTTCCTCAATAAATCGGTCAAAACCC    184

BSNT_05970___    161 GTTACGGTGCTG------AGCTTTTTGAAGCGAGGAGCAGGCTGATTG--    202
                     |.||      ||      ||||.||.||||||||..||..|||..|||  
RBAM_036130__    185 GCTA------TGACAGACAGCTGTTCGAAGCGAGACGCGAGCTTTTTGAC    228

BSNT_05970___    203 ----GAGAATGTGGTTTTTTTGACCCGCTCCATGAGGCGATTGCAGAACT    248
                         |.|||      |||||||..|||.|.||..|||.|||.||.|...|
RBAM_036130__    229 AGCCGGGAA------TTTTTTGGGCCGGTTCAAAAGGAGATCGCCGCCAT    272

BSNT_05970___    249 CATCAGTCATCCCACATCTGGTCATGAGGCATTT-----ACCATC-----    288
                     |||||     ||||.||    |||      ||.|     |.||||     
RBAM_036130__    273 CATCA-----CCCATAT----TCA------ATCTCCGCAAACATCAGCGG    307

BSNT_05970___    289 -----CTGGACAGC-GGTTGCGGTGAGGGTTCTCATTTGAATGCGCTTTG    332
                          .|||| .|| ||.|||||.||.||.||||||||  |..|||    
RBAM_036130__    308 CGGTATTGGA-TGCGGGGTGCGGAGAAGGGTCTCATTT--AGCCGC----    350

BSNT_05970___    333 CGGGTTTGATTATGCAGGGAAAG----CAGC-------------GATAGG    365
                             ..||||||   ||.|    ||||             ||..||
RBAM_036130__    351 --------CATATGCA---AATGGCTTCAGCCCGCTTTTTCCGTGACGGG    389

BSNT_05970___    366 AACCGGCATAGATCTTTCGAAGGATGGGATCTTAAAAGCTTCTAAGGCAT    415
                     ||.||||||.|||||.|||||.||.||..|..|..|.||..|.|||||.|
RBAM_036130__    390 AATCGGCATTGATCTCTCGAAAGAAGGTGTGCTGCATGCCGCAAAGGCCT    439

BSNT_05970___    416 TCAAAGATCAGATG---TGGGCGGTTGCCGATGTGGCGCGTGCTCCTTTT    462
                     ||...|||||.|||   |..||.||.||.|||||||||..|||.||.|||
RBAM_036130__    440 TCGGGGATCATATGGTTTTTGCCGTCGCTGATGTGGCGGATGCGCCGTTT    489

BSNT_05970___    463 CATGATCGCCAA-------TTTGATGTTGTGCTGTCTATTTTTTCGCCGT    505
                            |||.|       ||||||||.|||.|||||.||||.||.||.|
RBAM_036130__    490 -------GCCGACAGCTGTTTTGATGTCGTGATGTCTGTTTTATCACCTT    532

BSNT_05970___    506 CCAATT-------ATGCAGAGTTTCATAGACTGCT--GAAGAATGATGGC    546
                     ..||||       ||||||       .|||||..|  ||  ||.|..|||
RBAM_036130__    533 GGAATTACAAGGAATGCAG-------CAGACTTTTACGA--AAGGGCGGC    573

BSNT_05970___    547 ATGCTCGTAAAAGTAGTGCCGCGAAGCGACTATTTAATAGAATTAAGGCA    596
                     |...||.|.||||..||||||||..|.||.|||||.|..|||.|||||.|
RBAM_036130__    574 ACAGTCATTAAAGCGGTGCCGCGGCGTGATTATTTGAAGGAAGTAAGGGA    623

BSNT_05970___    597 ATTTTTAT---------------------AT------ACTGATTCACCAA    619
                     |||.||.|                     ||      .|.|||||..|  
RBAM_036130__    624 ATTCTTCTTCGGAGACAGCCCTCGGCGGAATGACACCGCCGATTCTGC--    671

BSNT_05970___    620 GGC-GCACGTATTCCAATGCGGCAGCTGTTGAGCGTTTTACAGCAAATGC    668
                     ||| |.||| ||||||| ||||  |||.|..|.|.|||.|..|||||.| 
RBAM_036130__    672 GGCGGGACG-ATTCCAA-GCGG--GCTTTCAAACCTTTGAGCGCAAACG-    716

BSNT_05970___    669 TGCACACAGCCGTCCTGTCAGGCTGCGCTATGTT-----AAAAC------    707
                                               |||.||||     ||.||      
RBAM_036130__    717 --------------------------GCTGTGTTACACGAAGACCTTAGC    740

BSNT_05970___    708 ---GCTTGACCAGCAGGCGATCCACTGGCTTCTCAAGATGACGCCGCTT-    753
                        ||.|||||         ||.|..|||||.|.||.|||||||| ||| 
RBAM_036130__    741 GCAGCCTGACC---------TCGAGCGGCTTGTGAAAATGACGCC-CTTA    780

BSNT_05970___    754 -----------GCCTGGTCGGCGCCGAAAG-ATCGAG-------TCAGCT    784
                                ..|||.|       ||.|| |||.||       ||||  
RBAM_036130__    781 ACATGGAAATGTACTGAT-------GACAGCATCCAGCGGTTTATCAG--    821

BSNT_05970___    785 TCCTGAAAGAGATGAAAACAGCCGATATTACGGTTGATGTTGATATCCTA    834
                      ||.|||||||         ||.|.|.|.|||.|.|||.|.|||||..||
RBAM_036130__    822 -CCAGAAAGAG---------GCTGCTGTCACGATAGATATCGATATTTTA    861

BSNT_05970___    835 ATAGGAA---------TGAAATGA    849
                     ||.||||         ||.||   
RBAM_036130__    862 ATCGGAACCGATCCGCTGTAA---    882


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