Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05960 and RBAM_036110

See DNA alignment / Visit BSNT_05960 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:27
# Commandline: needle
#    -asequence pep-align/BSNT_05960___yxjI.1.9828.seq
#    -bsequence pep-align/RBAM_036110___yxjI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05960___yxjI-RBAM_036110___yxjI.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05960___yxjI-RBAM_036110___yxjI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05960___yxjI
# 2: RBAM_036110___yxjI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 162
# Identity:      88/162 (54.3%)
# Similarity:   122/162 (75.3%)
# Gaps:           4/162 ( 2.5%)
# Score: 515.0
# 
#
#=======================================

BSNT_05960___      1 MIELFMKQKMFSFKDAFHIYDRDEQETFKVEGRFFSLGDSLQMTDSSGKT     50
                     |...::|::||:||:.|.::....:|.:.|||:.||.||.|::||..|:|
RBAM_036110__      1 MYHFYIKERMFTFKNRFQVFLESGKEVYNVEGKLFSFGDELKLTDLDGRT     50

BSNT_05960___     51 LVSIEQKLMSLLPRYEISIGGKTVCEVTKKVTFFKPKFVISGLNWEIDGD    100
                     |.|:.||||||:||||||:.||.||:|.||||||||||.||||.|::.||
RBAM_036110__     51 LASVNQKLMSLVPRYEISVSGKPVCQVIKKVTFFKPKFEISGLGWDLTGD    100

BSNT_05960___    101 LWRDEFQLTDGENVRMSVSKKWLSWGDSYHLQIANEGDVLICTAIAIVLD    150
                     :|...||:|||::.||:|:|.|:||||||||||..|.|:::|.|||||:|
RBAM_036110__    101 VWGRNFQVTDGKSNRMTVTKSWMSWGDSYHLQIEKEEDIVLCLAIAIVID    150

BSNT_05960___    151 MVLYNDEDESIF    162
                     |:|:..:.    
RBAM_036110__    151 MILFEGDK----    158


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.