Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05960 and RBAM_036110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:27
# Commandline: needle
# -asequence dna-align/BSNT_05960___yxjI.1.9828.seq
# -bsequence dna-align/RBAM_036110___yxjI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05960___yxjI-RBAM_036110___yxjI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05960___yxjI-RBAM_036110___yxjI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05960___yxjI
# 2: RBAM_036110___yxjI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 522
# Identity: 327/522 (62.6%)
# Similarity: 327/522 (62.6%)
# Gaps: 78/522 (14.9%)
# Score: 897.0
#
#
#=======================================
BSNT_05960___ 1 ATGATCGAGTTATTTATGAAACAAAAAATGTTCTCATTTAAAGATGCATT 50
|||..|.|.||.|..||.|||.|...||||||..|.|||||..||...||
RBAM_036110__ 1 ATGTACCATTTTTACATCAAAGAGCGAATGTTTACGTTTAAGAATCGTTT 50
BSNT_05960___ 51 TCACA----TTTATGACCGGGATGAACAAGAAACATTCAAGGTGGAGGG- 95
||| | ||..|||..|.| ||| |||||...|.|||.||.||.||
RBAM_036110__ 51 TCA-AGTGTTTCTTGAAAGCG--GAA-AAGAAGTCTACAATGTTGAAGGA 96
BSNT_05960___ 96 --GC-GTTTTTTCTCGTTAGGAGACTCATTACAAATGA--CAGACTCATC 140
|| |||| ||.||.||.|| ..||.||| |.||||.||.
RBAM_036110__ 97 AAGCTGTTT----TCATTCGGTGA------TGAACTGAAGCTGACTGATT 136
BSNT_05960___ 141 TGGGAAA-------ACGCTCGTTTCCA---TAGAACAAAAACTAATGTCT 180
||| | ||||||| ||| |..|.||.|||||.|||||.
RBAM_036110__ 137 TGG---ACGGCCGCACGCTCG---CCAGCGTCAACCAGAAACTGATGTCG 180
BSNT_05960___ 181 TTATTGCCGCGCTATGAGATTTCAATTGGCGGGAAAACAGTTTGTGAGGT 230
.|..|.||.||.||.||||||||..|..||||.|||.|.||.||..|.||
RBAM_036110__ 181 CTCGTTCCCCGTTACGAGATTTCCGTCAGCGGCAAACCCGTCTGCCAAGT 230
BSNT_05960___ 231 AACGAAGAAAGTAACGTTTTTCAAACCGAAATTTGTGATTTCCGGGCTTA 280
.|..||||||||.||||||||||||||||||||||..||||||||.||..
RBAM_036110__ 231 CATCAAGAAAGTCACGTTTTTCAAACCGAAATTTGAAATTTCCGGACTCG 280
BSNT_05960___ 281 ACTGGGAAATCGAT----GGTGATTTATGGAG--GGATGAATTCCAGCTG 324
.||||| ||| | ||.|||.|.|||.| ||| |.||.||..||
RBAM_036110__ 281 GCTGGG--ATC--TTACCGGCGATGTGTGGGGCCGGA--ATTTTCAAGTG 324
BSNT_05960___ 325 ACGGACGGGGAAAAT--GTCCGGATGTCAGTGAGCAAAAAGTGGCTCAGT 372
||.||| ||||||| ..|||||||.|.||.|.||||...|||.|.||.
RBAM_036110__ 325 ACAGAC--GGAAAATCAAACCGGATGACCGTCACCAAATCATGGATGAGC 372
BSNT_05960___ 373 TGGGGTGATTCCTATCACTTGCAGATTGCAAACGAGGGAGAT---GTTCT 419
|||||.|||||||||||.||||||||||.|||.||.|..||| ||||
RBAM_036110__ 373 TGGGGCGATTCCTATCATTTGCAGATTGAAAAGGAAGAGGATATCGTTC- 421
BSNT_05960___ 420 GATTTGCACT-GCCATCGCTATCGTGCTTGATATGGTTTTATATAACGAT 468
|||| .|| ||.|||||.||.|||.|.||||||.||.|||.|.|.|.|
RBAM_036110__ 422 --TTTG-TCTCGCGATCGCCATTGTGATAGATATGATTCTATTTGAGGGT 468
BSNT_05960___ 469 GA-AGATGAAAGTATTTTCTAA 489
|| |.||.|
RBAM_036110__ 469 GATAAATAA------------- 477
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