Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05960 and RBAM_036110

See Amino acid alignment / Visit BSNT_05960 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:27
# Commandline: needle
#    -asequence dna-align/BSNT_05960___yxjI.1.9828.seq
#    -bsequence dna-align/RBAM_036110___yxjI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05960___yxjI-RBAM_036110___yxjI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05960___yxjI-RBAM_036110___yxjI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05960___yxjI
# 2: RBAM_036110___yxjI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 522
# Identity:     327/522 (62.6%)
# Similarity:   327/522 (62.6%)
# Gaps:          78/522 (14.9%)
# Score: 897.0
# 
#
#=======================================

BSNT_05960___      1 ATGATCGAGTTATTTATGAAACAAAAAATGTTCTCATTTAAAGATGCATT     50
                     |||..|.|.||.|..||.|||.|...||||||..|.|||||..||...||
RBAM_036110__      1 ATGTACCATTTTTACATCAAAGAGCGAATGTTTACGTTTAAGAATCGTTT     50

BSNT_05960___     51 TCACA----TTTATGACCGGGATGAACAAGAAACATTCAAGGTGGAGGG-     95
                     ||| |    ||..|||..|.|  ||| |||||...|.|||.||.||.|| 
RBAM_036110__     51 TCA-AGTGTTTCTTGAAAGCG--GAA-AAGAAGTCTACAATGTTGAAGGA     96

BSNT_05960___     96 --GC-GTTTTTTCTCGTTAGGAGACTCATTACAAATGA--CAGACTCATC    140
                       || ||||    ||.||.||.||      ..||.|||  |.||||.||.
RBAM_036110__     97 AAGCTGTTT----TCATTCGGTGA------TGAACTGAAGCTGACTGATT    136

BSNT_05960___    141 TGGGAAA-------ACGCTCGTTTCCA---TAGAACAAAAACTAATGTCT    180
                     |||   |       |||||||   |||   |..|.||.|||||.|||||.
RBAM_036110__    137 TGG---ACGGCCGCACGCTCG---CCAGCGTCAACCAGAAACTGATGTCG    180

BSNT_05960___    181 TTATTGCCGCGCTATGAGATTTCAATTGGCGGGAAAACAGTTTGTGAGGT    230
                     .|..|.||.||.||.||||||||..|..||||.|||.|.||.||..|.||
RBAM_036110__    181 CTCGTTCCCCGTTACGAGATTTCCGTCAGCGGCAAACCCGTCTGCCAAGT    230

BSNT_05960___    231 AACGAAGAAAGTAACGTTTTTCAAACCGAAATTTGTGATTTCCGGGCTTA    280
                     .|..||||||||.||||||||||||||||||||||..||||||||.||..
RBAM_036110__    231 CATCAAGAAAGTCACGTTTTTCAAACCGAAATTTGAAATTTCCGGACTCG    280

BSNT_05960___    281 ACTGGGAAATCGAT----GGTGATTTATGGAG--GGATGAATTCCAGCTG    324
                     .|||||  |||  |    ||.|||.|.|||.|  |||  |.||.||..||
RBAM_036110__    281 GCTGGG--ATC--TTACCGGCGATGTGTGGGGCCGGA--ATTTTCAAGTG    324

BSNT_05960___    325 ACGGACGGGGAAAAT--GTCCGGATGTCAGTGAGCAAAAAGTGGCTCAGT    372
                     ||.|||  |||||||  ..|||||||.|.||.|.||||...|||.|.||.
RBAM_036110__    325 ACAGAC--GGAAAATCAAACCGGATGACCGTCACCAAATCATGGATGAGC    372

BSNT_05960___    373 TGGGGTGATTCCTATCACTTGCAGATTGCAAACGAGGGAGAT---GTTCT    419
                     |||||.|||||||||||.||||||||||.|||.||.|..|||   |||| 
RBAM_036110__    373 TGGGGCGATTCCTATCATTTGCAGATTGAAAAGGAAGAGGATATCGTTC-    421

BSNT_05960___    420 GATTTGCACT-GCCATCGCTATCGTGCTTGATATGGTTTTATATAACGAT    468
                       |||| .|| ||.|||||.||.|||.|.||||||.||.|||.|.|.|.|
RBAM_036110__    422 --TTTG-TCTCGCGATCGCCATTGTGATAGATATGATTCTATTTGAGGGT    468

BSNT_05960___    469 GA-AGATGAAAGTATTTTCTAA    489
                     || |.||.|             
RBAM_036110__    469 GATAAATAA-------------    477


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