Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_01012 and RBAM_035920
See
DNA alignment /
Visit
BSNT_01012 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence pep-align/BSNT_01012.1.9828.seq
# -bsequence pep-align/RBAM_035920___ydhS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_01012-RBAM_035920___ydhS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01012-RBAM_035920___ydhS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01012
# 2: RBAM_035920___ydhS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 318
# Identity: 71/318 (22.3%)
# Similarity: 93/318 (29.2%)
# Gaps: 185/318 (58.2%)
# Score: 311.5
#
#
#=======================================
BSNT_01012 0 -------------------------------------------------- 0
RBAM_035920__ 1 MTKLLFLEPVFKERLWGGTKLRDTFGYEIPSERTGECWAISAHPHGTSIV 50
BSNT_01012 1 ---------------------------MFPLLVKLLDANMDLSVQVHPDD 23
.||||.|:|||||||||||||||
RBAM_035920__ 51 RNGPFSGTSLHRLWNEHPGLFGHPKEDAFPLLTKILDANMDLSVQVHPDD 100
BSNT_01012 24 DYAKLHENGDLGKT------------------------------------ 37
.||..||||:||||
RBAM_035920__ 101 AYAHRHENGELGKTECWYVLDCKKDAELILGHRAQTREDFVQLIERNEWD 150
BSNT_01012 37 -------------------------------------------------- 37
RBAM_035920__ 151 HLLRRIPIKPGDFFYVPSGTLHALCEGTLVLEIQQSSDATYRLYDYDRTD 200
BSNT_01012 38 ---------------VITIPHIDKVHTPEVKEVGNAEIIVYVQSDYFSVY 72
|..|||.|:.......::|:|.|....::.:||||
RBAM_035920__ 201 GNGNKRELHLQKAIDVTDIPHTDENVKSTKHQIGDALITTLAETPFFSVY 250
BSNT_01012 73 KWKISGRAAFPSHQTYLLGSVLSGSGRIINNGIQYECNAGSHFVLPAHFG 122
:|.:||:|:||:...|||.||:.|.|.:....| :.|.||::||..|
RBAM_035920__ 251 QWDVSGKASFPAPGRYLLASVMKGRGELDGCPI----HKGDHFIVPADSG 296
BSNT_01012 123 EFSIEGTCEFMISHP--- 137
:|.|||.||.::|||
RBAM_035920__ 297 DFVIEGDCEVIVSHPSSP 314
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.