Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01012 and RBAM_035920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_01012.1.9828.seq
# -bsequence dna-align/RBAM_035920___ydhS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01012-RBAM_035920___ydhS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01012-RBAM_035920___ydhS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01012
# 2: RBAM_035920___ydhS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 971
# Identity: 287/971 (29.6%)
# Similarity: 287/971 (29.6%)
# Gaps: 583/971 (60.0%)
# Score: 660.0
#
#
#=======================================
BSNT_01012 0 -------------------------------------------------- 0
RBAM_035920__ 1 ATGACGAAGCTCTTATTTTTGGAACCGGTTTTTAAAGAAAGATTATGGGG 50
BSNT_01012 0 -------------------------------------------------- 0
RBAM_035920__ 51 CGGGACGAAGCTGCGCGATACATTCGGGTATGAGATTCCTTCTGAGCGGA 100
BSNT_01012 0 -------------------------------------------------- 0
RBAM_035920__ 101 CGGGAGAGTGCTGGGCGATTTCAGCTCATCCGCACGGCACATCCATCGTG 150
BSNT_01012 0 -------------------------------------------------- 0
RBAM_035920__ 151 CGGAACGGGCCTTTTTCCGGAACATCATTACACCGTCTCTGGAATGAACA 200
BSNT_01012 1 -------------------------------GTGTTTCCGCTGCTGGTAA 19
|..|||||.|||||...||
RBAM_035920__ 201 CCCTGGCCTGTTCGGACATCCGAAAGAAGACGCCTTTCCCCTGCTTACAA 250
BSNT_01012 20 AGCTGCTGGACGCCAATATGGATCTCTCCGTGCAAGTCCATCCTGATGAT 69
|..|.||.|||||.||||||||..|.||||||||.||.|||||.|||||.
RBAM_035920__ 251 AAATTCTTGACGCAAATATGGACTTATCCGTGCAGGTTCATCCGGATGAC 300
BSNT_01012 70 GATTATGCAAAACTGCATGAAAATGGCGACCTTGGTAAAACGG------- 112
|..||||||.|.|.|||||||||.||.||.||.||.|||||||
RBAM_035920__ 301 GCATATGCACATCGGCATGAAAACGGAGAACTCGGAAAAACGGAATGCTG 350
BSNT_01012 112 -------------------------------------------------- 112
RBAM_035920__ 351 GTACGTGTTGGACTGCAAAAAAGACGCGGAGCTCATTTTAGGGCATCGCG 400
BSNT_01012 113 ---------------------------TCAT--AACGATA---------- 123
|||| |||||.|
RBAM_035920__ 401 CCCAAACGAGAGAAGACTTCGTTCAGCTCATTGAACGAAACGAGTGGGAT 450
BSNT_01012 124 -----------CCGCATATCGATAAAG----------------------- 139
||||||..|.||.|||
RBAM_035920__ 451 CACCTGCTCCGCCGCATCCCCATTAAGCCCGGCGACTTTTTCTATGTCCC 500
BSNT_01012 140 -----------TGCA----------------------------------- 143
||||
RBAM_035920__ 501 GAGCGGCACACTGCACGCTTTATGTGAAGGTACGCTCGTTCTTGAAATCC 550
BSNT_01012 144 -----------------------------TAC-------ACCGGAAGTA- 156
||| ||||||.|.|
RBAM_035920__ 551 AGCAAAGCTCTGATGCCACCTACCGGCTTTACGACTATGACCGGACGGAT 600
BSNT_01012 157 ---------------------------------AAAGAAGTTG--GTAAC 171
||||.|.||| ||||
RBAM_035920__ 601 GGGAACGGGAATAAACGCGAGCTTCATCTTCAGAAAGCAATTGACGTAA- 649
BSNT_01012 172 GCTGAGAT----CAT-----TGTTTATGT-----GCA------ATCAGA- 200
|.||.|| ||| ||...|||| ||| ||||||
RBAM_035920__ 650 -CAGACATTCCCCATACCGATGAAAATGTAAAAAGCACAAAGCATCAGAT 698
BSNT_01012 201 -----------TTAT-------------------------TTCTCAGTGT 214
|||| ||.|||||.|
RBAM_035920__ 699 CGGAGATGCTCTTATTACAACACTTGCCGAAACACCTTTCTTTTCAGTTT 748
BSNT_01012 215 ACAAATGGAAGATTAGCGGCCGAGCTGCTTTTCCTTCACATCAAACC--- 261
|..|||||.|..|.|||||...|||..|.||.||..||| ||
RBAM_035920__ 749 ATCAATGGGATGTGAGCGGGAAAGCATCATTCCCCGCAC------CCGGC 792
BSNT_01012 262 ---TATTTGCTGGGGAGTGTTCTGAGCGGATCAGGACGAATCATAAATAA 308
|||||.||.|..||.||..|||..|||...||| |||
RBAM_035920__ 793 CGGTATTTACTCGCAAGCGTCATGAAAGGACGCGGA-GAA---------- 831
BSNT_01012 309 TGGTATTCAGTATGAATG--CAATGC----AGGCTCACACTTTGTCTTGC 352
|.|.|||.||| |.||.| ||||...||||||.||.|||
RBAM_035920__ 832 -------CTGGATGGATGCCCCATTCACAAAGGCGATCACTTTATCGTGC 874
BSNT_01012 353 CTGCGCATTTTGGCGAGTTTTCAATAGAAGGAACATGTGAATTCATGATA 402
|.|||.|||..||.||.|||...|||||||||...|||||..|.||..|.
RBAM_035920__ 875 CGGCGGATTCCGGAGATTTTGTTATAGAAGGAGATTGTGAGGTTATCGTT 924
BSNT_01012 403 TCTCATCCTTAA--------- 414
||.|||||||.|
RBAM_035920__ 925 TCACATCCTTCATCACCCTAA 945
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