Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01010 and RBAM_035910

See DNA alignment / Visit BSNT_01010 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence pep-align/BSNT_01010___ydhR.1.9828.seq
#    -bsequence pep-align/RBAM_035910___ydhR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01010___ydhR-RBAM_035910___ydhR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01010___ydhR-RBAM_035910___ydhR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01010___ydhR
# 2: RBAM_035910___ydhR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 299
# Identity:     195/299 (65.2%)
# Similarity:   235/299 (78.6%)
# Gaps:           6/299 ( 2.0%)
# Score: 1037.0
# 
#
#=======================================

BSNT_01010___      1 MLGGIEAGGTKVICAVGKEDGTIIDRIEFPTKMPDETIEKVIQYFRQFSL     50
                     |||||||||||.:||.|:.||||:||.||||..||:|:.:||:||:.|.:
RBAM_035910__      1 MLGGIEAGGTKFVCAAGQRDGTILDRAEFPTGEPDDTLRQVIRYFKDFPI     50

BSNT_01010___     51 QAIGIGSFGPVDNDKTSQTYGTIMATPKAGWRHYPFLQTVKNEMKIPVGF    100
                     .|||||||||:|....|||||.|.||||..||:.|.|||:|:.:.||.||
RBAM_035910__     51 DAIGIGSFGPIDIRPDSQTYGCITATPKTAWRNCPILQTIKSALDIPAGF    100

BSNT_01010___    101 STDVNAAALGEFLFGEAKGLDSCLYITIGTGIGAGAIVGGRLLQGLSHPE    150
                     :||||||||||..||.||..|||||:|:|||||||||:.||.:|||||||
RBAM_035910__    101 TTDVNAAALGEASFGAAKNADSCLYLTVGTGIGAGAIMNGRFVQGLSHPE    150

BSNT_01010___    151 MGHIYIRRHPDDAYQGKCPYHGDCFEGLASGPAIEARWGKKAADLSGIAQ    200
                     |||||:||||||.|:|.||||.||.||||:|||||.||||||..|:...:
RBAM_035910__    151 MGHIYVRRHPDDGYKGNCPYHTDCLEGLAAGPAIEKRWGKKAFLLTDQQE    200

BSNT_01010___    201 VWELEGYYIAQALAQYILILAPKKIILGGGVMQQKQVFSYIYQYVPKIMN    250
                     ||||||||||:||.||||||:|:|||||||||:|:|:||.|.|:|.|.:|
RBAM_035910__    201 VWELEGYYIAEALVQYILILSPEKIILGGGVMKQRQLFSSIRQHVKKRLN    250

BSNT_01010___    251 NYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAHQALQAEAASGEVRS    299
                     .|:|.    .||..:||||:||.::|..|:||||.:||  |||:.|...
RBAM_035910__    251 QYIDL----PDIEHFIVPPQLGIHSGAAGSLVLAERAL--EAANREAGK    293


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