Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01010 and RBAM_035910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_01010___ydhR.1.9828.seq
# -bsequence dna-align/RBAM_035910___ydhR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01010___ydhR-RBAM_035910___ydhR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01010___ydhR-RBAM_035910___ydhR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01010___ydhR
# 2: RBAM_035910___ydhR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 950
# Identity: 621/950 (65.4%)
# Similarity: 621/950 (65.4%)
# Gaps: 118/950 (12.4%)
# Score: 1869.5
#
#
#=======================================
BSNT_01010___ 1 ATGCTTGGCGGTATTGAAGCAGGCGGCACAAAGGTTATTTGTGCTGTCGG 50
||||||||.|||||||||||.||||||||.||..||.|.|||||.|.|||
RBAM_035910__ 1 ATGCTTGGAGGTATTGAAGCCGGCGGCACGAAATTTGTCTGTGCCGCCGG 50
BSNT_01010___ 51 -TAAAGAAGATGGAACAATCATTGACCGAATAGAATTCCCTAC-----AA 94
.|||| |||.||.||.||..|.|||.||..|||.||.||.|| ||
RBAM_035910__ 51 ACAAAG-AGACGGCACCATTCTGGACAGAGCAGAGTTTCCGACGGGAGAA 99
BSNT_01010___ 95 AGATGCCGGATGAAAC-----GATAGAGAAAGTGATTCAATATTTTCGCC 139
||||||||.|| ||.|| |||||.|..||.|||
RBAM_035910__ 100 -----CCGGATGACACACTCAGACAG-----GTGATCCGTTACTTT---- 135
BSNT_01010___ 140 A---ATTTTC--ATTACAGGCGATCGGCATCGGCTCCTTTGGCCCCGTTG 184
| ||||.| | ||.|.||.|||||||||||.||.||.||.||..|||
RBAM_035910__ 136 AAAGATTTCCCGA-TAGACGCCATCGGCATCGGGTCGTTCGGACCGATTG 184
BSNT_01010___ 185 ATAAC------GATAAAACCAGTCAAACATACGGTACCATTATGGCCACG 228
|||.| || |||||||||||||||...|||.|..||.||.
RBAM_035910__ 185 ATATCCGTCCTGA------CAGTCAAACATACGGGTGCATCACCGCGACA 228
BSNT_01010___ 229 CCGAAAGCGGGCTGGAGACACTACCCCTTTTTGCAAACTGTTAAGAACGA 278
|||||..|.|.||||.|..|||.|||..||.|.|||||..|.||.|.||.
RBAM_035910__ 229 CCGAAGACAGCCTGGCGGAACTGCCCTATTCTTCAAACGATCAAAAGCGC 278
BSNT_01010___ 279 AATGAAAATTCCAGTCGGATTTAGTACAGATGTCAACGCTGCGGCGCTGG 328
..||.|.|||||.|..||.||.|..||.||.||.||.||.||||||||.|
RBAM_035910__ 279 TCTGGATATTCCCGCAGGCTTCACCACCGACGTTAATGCGGCGGCGCTTG 328
BSNT_01010___ 329 GTGAA--TTCCTTTTCGGTGAAGCGAA----GGGTCTCGACAGCTGCCTG 372
|.||| ||| ||||||.|..||.|| |.| |||||||||||.
RBAM_035910__ 329 GAGAAGCTTC--TTTCGGCGCGGCCAAAAACGCG----GACAGCTGCCTC 372
BSNT_01010___ 373 TATATAACGATTGGTACTGGCATCGGTGCGGGCGCAAT--TGTAGGGGGC 420
|||.|.|||.|.||.||.||||||||.||||||||.|| ||.| .|||
RBAM_035910__ 373 TATTTGACGGTCGGCACAGGCATCGGCGCGGGCGCCATCATGAA--CGGC 420
BSNT_01010___ 421 AGGCTCCTTCAGGGGCTGTCGCACCCAGAGATGGGCCATATTTATATCCG 470
||..|..||||.||||||||.|||||.||.||||||||.||||||.||.|
RBAM_035910__ 421 AGATTTGTTCAAGGGCTGTCTCACCCTGAAATGGGCCACATTTATGTCAG 470
BSNT_01010___ 471 GAGGCACCCGGATGACGCATACCAAGGGAAGTGTCCTTATCATGGAGATT 520
.||.||.|||||.||||..|||.||||.||.||.||.||.|||..|||||
RBAM_035910__ 471 AAGACATCCGGACGACGGCTACAAAGGCAATTGCCCATACCATACAGATT 520
BSNT_01010___ 521 GCTTTGAAGGCTTGGCTTCCGGTCCCGCCATTGAAGCGCGCTGGGGAAAA 570
|..|.||||||.|.||..|.||.|||||||||||....||||||||.|||
RBAM_035910__ 521 GTCTGGAAGGCCTCGCGGCAGGCCCCGCCATTGAGAAACGCTGGGGGAAA 570
BSNT_01010___ 571 AAAGCCGCGGATTT---ATCAGGTAT-AGCA-CAAGTCTGGGAACTGGAA 615
||||| |||| .|||.|.|| |||| .||||.|||||.||.||.
RBAM_035910__ 571 AAAGC-----ATTTTTGCTCACGGATCAGCAGGAAGTGTGGGAGCTTGAG 615
BSNT_01010___ 616 GGGTACTATATTGCCCAAGCACTGGCTCAGTATATTTTGATCCTTGCACC 665
||.||.|||||||||.||||.||.|..|||||||||.|.||.|||.|.||
RBAM_035910__ 616 GGCTATTATATTGCCGAAGCGCTTGTGCAGTATATTCTCATACTTTCGCC 665
BSNT_01010___ 666 TAAAAAAATCATTCTTGGCGGCGGCGTCATGCAACAGAAACAAGTGTTTT 715
..||||.||||||||.|||||.|||||||||.|.|||...||..||||.|
RBAM_035910__ 666 GGAAAAGATCATTCTCGGCGGGGGCGTCATGAAGCAGCGGCAGCTGTTCT 715
BSNT_01010___ 716 CTTATATCTATCAATATGTACCGAAAATCA-----TGAA-CAACTACTTA 759
|||.||||..|||..|.|| ||||| | |||| ||| ||
RBAM_035910__ 716 CTTCTATCCGTCAGCACGT---GAAAA--AGCGGCTGAATCAA-----TA 755
BSNT_01010___ 760 GATTTTTCTG-----AATTGTCAGATGATATAAGTGATTATATTGTACCT 804
.|||..|||| .|||| || .|.|.|||.||.||.
RBAM_035910__ 756 TATTGATCTGCCCGACATTG-----------AA--CACTTTATCGTTCCC 792
BSNT_01010___ 805 CCACGTTTAGGCAGTAACGCCGGAATCATCGGC----ACGCTAGTTTTAG 850
||.|..|||||.|.|.||.|||| ..|||| .||||.||.||.|
RBAM_035910__ 793 CCTCAATTAGGGATTCACTCCGG----CGCGGCCGGTTCGCTCGTATTGG 838
BSNT_01010___ 851 CGCATCAGGCCTTACAAGCAGAGGCAGCATCCGGGGAGGTGCGATCATGA 900
||.|.|..||.|||.|||| |||| |.|| ||||||.|.||..||||
RBAM_035910__ 839 CGGAGCGCGCATTAGAAGC---GGCA--AACC-GGGAGGCGGGAAAATGA 882
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