Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01002 and RBAM_035880

See DNA alignment / Visit BSNT_01002 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence pep-align/BSNT_01002.1.9828.seq
#    -bsequence pep-align/RBAM_035880___ydhN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01002-RBAM_035880___ydhN.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01002-RBAM_035880___ydhN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01002
# 2: RBAM_035880___ydhN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 110
# Identity:      47/110 (42.7%)
# Similarity:    56/110 (50.9%)
# Gaps:          44/110 (40.0%)
# Score: 246.0
# 
#
#=======================================

BSNT_01002         1 MEQMKITNLTDEQISFQLILHSGNARSCIIQSLRAYKEGNKDEADALIAK     50
                          :...||||||||||||||||||.||||:||||:|..||:|:.:.|
RBAM_035880__      1 -----METYTDEQISFQLILHSGNARSNIIQSIRAYKDGRTDESDSFLTK     45

BSNT_01002        51 AEQDLSAAHDIHFQMIQKESG-----------------------------     71
                     ||::|..||||||||||||:|                             
RBAM_035880__     46 AEEELGKAHDIHFQMIQKEAGGAKTDVSLLFMHAEDHLMSALTMKELVKE     95

BSNT_01002        71 ----------     71
                               
RBAM_035880__     96 MLDLFQSKNL    105


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