Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01002 and RBAM_035880

See Amino acid alignment / Visit BSNT_01002 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_01002.1.9828.seq
#    -bsequence dna-align/RBAM_035880___ydhN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01002-RBAM_035880___ydhN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01002-RBAM_035880___ydhN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01002
# 2: RBAM_035880___ydhN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 345
# Identity:     150/345 (43.5%)
# Similarity:   150/345 (43.5%)
# Gaps:         156/345 (45.2%)
# Score: 479.5
# 
#
#=======================================

BSNT_01002         1 ATGGAACAGATGAAAATCACGAATTTA-ACAGACGAGCAAATCAGTTTTC     49
                     ||||||            |||    || ||.||.||.||.||||||||||
RBAM_035880__      1 ATGGAA------------ACG----TACACGGATGAACAGATCAGTTTTC     34

BSNT_01002        50 AGCTTATCCTGCACAGTGGCAATGCCCGCAGCTGCATCATACAATCACTG     99
                     ||||.||.||.|||||.|||||||||||||||...||.||.|||||..|.
RBAM_035880__     35 AGCTGATTCTTCACAGCGGCAATGCCCGCAGCAATATTATTCAATCGATA     84

BSNT_01002       100 CGCGCCTACAAAGAAGG--GAACAAGGATGAGGCGGATGCCCTCATT---    144
                     |||||.||.|||||.||  |.|||  ||||||.|.||    |||.||   
RBAM_035880__     85 CGCGCATATAAAGACGGCCGGACA--GATGAGTCAGA----CTCCTTTCT    128

BSNT_01002       145 -GCCAAGGCTG-AGCAGGATTTATCCGCG----GCCCATGACATTCACTT    188
                      .|.||||||| ||.||     |.|.|.|    ||.||.|||||.||.||
RBAM_035880__    129 GACAAAGGCTGAAGAAG-----AACTGGGGAAAGCGCACGACATCCATTT    173

BSNT_01002       189 TCAAATGATACAAAAGGAATCCGGCTGA----------------------    216
                     |||.|||||.|||||.|||.|||||.|.                      
RBAM_035880__    174 TCAGATGATTCAAAAAGAAGCCGGCGGCGCCAAAACGGATGTCTCTCTGC    223

BSNT_01002       216 --------------------------------------------------    216
                                                                       
RBAM_035880__    224 TTTTTATGCATGCTGAAGACCACTTAATGTCAGCGCTTACAATGAAAGAG    273

BSNT_01002       216 ---------------------------------------------    216
                                                                  
RBAM_035880__    274 CTCGTCAAAGAAATGCTCGACTTATTTCAATCAAAGAATTTATAA    318


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.