Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00916 and RBAM_035850

See DNA alignment / Visit BSNT_00916 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence pep-align/BSNT_00916___ydeT.1.9828.seq
#    -bsequence pep-align/RBAM_035850___ydeT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00916___ydeT-RBAM_035850___ydeT.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00916___ydeT-RBAM_035850___ydeT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00916___ydeT
# 2: RBAM_035850___ydeT
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 116
# Identity:      57/116 (49.1%)
# Similarity:    81/116 (69.8%)
# Gaps:           5/116 ( 4.3%)
# Score: 312.0
# 
#
#=======================================

BSNT_00916___      1 -----MTIDVAAMTRCLKTLSDQTRLIMMRLFLEKEYCVCQLVDMFEMSQ     45
                          ..:....:::|||.|||.|||:|::|..:||||||:|..:|::||
RBAM_035850__      1 MERRHHALSSEGISQCLKLLSDPTRLLMLKLLKDKEYCVCELTAIFDISQ     50

BSNT_00916___     46 PAISQHLRKLRNAGFVNEDRRGQWRYYSINGSCPEFDTLQLILHQIDQED     95
                     |.||||||||:|||.|.|.|.||||||:|:.|.||:..:..||.|||::|
RBAM_035850__     51 PGISQHLRKLKNAGLVRERREGQWRYYAIHPSGPEYALVCSILQQIDEKD    100

BSNT_00916___     96 ELLNHIKQKKTQACCQ    111
                     |:|..::||:....|:
RBAM_035850__    101 EVLQTLRQKEVIVTCR    116


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