Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00916 and RBAM_035850

See Amino acid alignment / Visit BSNT_00916 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence dna-align/BSNT_00916___ydeT.1.9828.seq
#    -bsequence dna-align/RBAM_035850___ydeT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00916___ydeT-RBAM_035850___ydeT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00916___ydeT-RBAM_035850___ydeT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00916___ydeT
# 2: RBAM_035850___ydeT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 382
# Identity:     222/382 (58.1%)
# Similarity:   222/382 (58.1%)
# Gaps:          77/382 (20.2%)
# Score: 603.5
# 
#
#=======================================

BSNT_00916___      1 -------------ATGACGATTGATGTTGCG--GCGATGACTCGTTGTTT     35
                                  ||.|.|.||.|.|||.||  |.|||.|..|..||..|
RBAM_035850__      1 ATGGAACGGAGGCATCATGCTTTAAGTTCCGAAGGGATCAGCCAGTGCCT     50

BSNT_00916___     36 GAAAACACTTAGTGATCAAACTAGGCTTATAATGATG-AGATTATTTCTT     84
                     .|||...||.||.||.|..||.||||||.|.|||.|| ||.||     .|
RBAM_035850__     51 CAAACTTCTAAGCGACCCGACGAGGCTTTTGATGCTGAAGCTT-----CT     95

BSNT_00916___     85 GAA----AAAGAATATTGTGTCTGTCAATTGGTTGA----TATGTTCGAA    126
                     |||    ||.||||||||||||||..|    |.|||    |||.||.||.
RBAM_035850__     96 GAAGGATAAGGAATATTGTGTCTGCGA----GCTGACGGCTATTTTTGAT    141

BSNT_00916___    127 ATGAGCCAGCCCGCCATAAGCCAGCATTTGCGGAAATTAAGAAACGCAGG    176
                     ||.||.|||||||.|||.||||||||.|||||||||||||..|||||.||
RBAM_035850__    142 ATAAGTCAGCCCGGCATCAGCCAGCACTTGCGGAAATTAAAGAACGCCGG    191

BSNT_00916___    177 TTTTGT----GAATGAGGACAGAAGAGGCCAATGGCGTTATTATTCAATA    222
                     ..||||    |||.||.|..||    ||.||.|||||.||.|||.|.||.
RBAM_035850__    192 CCTTGTGCGGGAAAGACGCGAG----GGTCAGTGGCGGTACTATGCCATT    237

BSNT_00916___    223 AATGGTTCCTGTCCTGAGTTTGATAC-------ATTGCAATTGATCTTAC    265
                     .||...|||.||||.||     ||||       .||||  |.|||..|.|
RBAM_035850__    238 CATCCGTCCGGTCCGGA-----ATACGCGCTGGTTTGC--TCGATTCTGC    280

BSNT_00916___    266 ATCAAATCGATCAGGAGGATGAATTGTTAAACCATATCAAACA-------    308
                     |.||.||.|||.|..||||.|||.|.|||        ||.|||       
RBAM_035850__    281 AGCAGATAGATGAAAAGGACGAAGTTTTA--------CAGACATTGCGGC    322

BSNT_00916___    309 AAAGAAAACTCAAGCGTGT----TGCCAGTAA    336
                     |||.|.||.|||   .|||    ||||.||||
RBAM_035850__    323 AAAAAGAAGTCA---TTGTTACATGCCGGTAA    351


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