Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00916 and RBAM_035850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_00916___ydeT.1.9828.seq
# -bsequence dna-align/RBAM_035850___ydeT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00916___ydeT-RBAM_035850___ydeT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00916___ydeT-RBAM_035850___ydeT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00916___ydeT
# 2: RBAM_035850___ydeT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 382
# Identity: 222/382 (58.1%)
# Similarity: 222/382 (58.1%)
# Gaps: 77/382 (20.2%)
# Score: 603.5
#
#
#=======================================
BSNT_00916___ 1 -------------ATGACGATTGATGTTGCG--GCGATGACTCGTTGTTT 35
||.|.|.||.|.|||.|| |.|||.|..|..||..|
RBAM_035850__ 1 ATGGAACGGAGGCATCATGCTTTAAGTTCCGAAGGGATCAGCCAGTGCCT 50
BSNT_00916___ 36 GAAAACACTTAGTGATCAAACTAGGCTTATAATGATG-AGATTATTTCTT 84
.|||...||.||.||.|..||.||||||.|.|||.|| ||.|| .|
RBAM_035850__ 51 CAAACTTCTAAGCGACCCGACGAGGCTTTTGATGCTGAAGCTT-----CT 95
BSNT_00916___ 85 GAA----AAAGAATATTGTGTCTGTCAATTGGTTGA----TATGTTCGAA 126
||| ||.||||||||||||||..| |.||| |||.||.||.
RBAM_035850__ 96 GAAGGATAAGGAATATTGTGTCTGCGA----GCTGACGGCTATTTTTGAT 141
BSNT_00916___ 127 ATGAGCCAGCCCGCCATAAGCCAGCATTTGCGGAAATTAAGAAACGCAGG 176
||.||.|||||||.|||.||||||||.|||||||||||||..|||||.||
RBAM_035850__ 142 ATAAGTCAGCCCGGCATCAGCCAGCACTTGCGGAAATTAAAGAACGCCGG 191
BSNT_00916___ 177 TTTTGT----GAATGAGGACAGAAGAGGCCAATGGCGTTATTATTCAATA 222
..|||| |||.||.|..|| ||.||.|||||.||.|||.|.||.
RBAM_035850__ 192 CCTTGTGCGGGAAAGACGCGAG----GGTCAGTGGCGGTACTATGCCATT 237
BSNT_00916___ 223 AATGGTTCCTGTCCTGAGTTTGATAC-------ATTGCAATTGATCTTAC 265
.||...|||.||||.|| |||| .|||| |.|||..|.|
RBAM_035850__ 238 CATCCGTCCGGTCCGGA-----ATACGCGCTGGTTTGC--TCGATTCTGC 280
BSNT_00916___ 266 ATCAAATCGATCAGGAGGATGAATTGTTAAACCATATCAAACA------- 308
|.||.||.|||.|..||||.|||.|.||| ||.|||
RBAM_035850__ 281 AGCAGATAGATGAAAAGGACGAAGTTTTA--------CAGACATTGCGGC 322
BSNT_00916___ 309 AAAGAAAACTCAAGCGTGT----TGCCAGTAA 336
|||.|.||.||| .||| ||||.||||
RBAM_035850__ 323 AAAAAGAAGTCA---TTGTTACATGCCGGTAA 351
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