Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05877 and RBAM_035670

See DNA alignment / Visit BSNT_05877 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:23
# Commandline: needle
#    -asequence pep-align/BSNT_05877___gspA.1.9828.seq
#    -bsequence pep-align/RBAM_035670___gspA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05877___gspA-RBAM_035670___gspA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05877___gspA-RBAM_035670___gspA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05877___gspA
# 2: RBAM_035670___gspA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 286
# Identity:     215/286 (75.2%)
# Similarity:   244/286 (85.3%)
# Gaps:           6/286 ( 2.1%)
# Score: 1199.0
# 
#
#=======================================

BSNT_05877___      1 MRKDEIMHIVSCADDNYARHLGGMFVSLLTNMDQEREVKLYVIDGGIKPD     50
                           |||||||||:|||||||||.|||.|||:.|:.|||||||||..:
RBAM_035670__      1 ------MHIVSCADDHYARHLGGMFASLLMNMDKTRDAKLYVIDGGITAE     44

BSNT_05877___     51 NKKRLEETTLKFGVPIEFLEVDTNMYEHAVESSHITKAAYYRISIPDLIK    100
                     ||.:||:|.:.||.|:||||||.:.|:|||||||||||||||||||||||
RBAM_035670__     45 NKDKLEQTAMSFGTPLEFLEVDADQYKHAVESSHITKAAYYRISIPDLIK     94

BSNT_05877___    101 DESIKRMIYIDCDALVLEDISKLWDLDIAPYTVAAVEDAGQHERLKEMNV    150
                     |||:||||||||||:|:||||.||||||:|..||||||||||||||:||:
RBAM_035670__     95 DESVKRMIYIDCDAIVMEDISVLWDLDISPAIVAAVEDAGQHERLKKMNI    144

BSNT_05877___    151 TDTGKYFNSGIMIIDFESWRNQNITEKVINFINEHPDEDFLVLHDQDALN    200
                     :||.|||||||||||||.||.|||:||||:||||:..|||||.|||||||
RBAM_035670__    145 SDTAKYFNSGIMIIDFEPWRKQNISEKVIDFINENSSEDFLVFHDQDALN    194

BSNT_05877___    201 AILYDQWYELHPRWNAQTYIMLKLKTPPTLLGRKQYNETRENPAIVHFCG    250
                     |||||||:||||||||||:|::..||||.|:.|.:|.|||..||||||||
RBAM_035670__    195 AILYDQWHELHPRWNAQTHIIMNEKTPPELIDRIRYRETRAEPAIVHFCG    244

BSNT_05877___    251 GEKPWNSNTKHPYRDEYFHYMSYTKWNTIGNPAINQ    286
                     .:||||:.|.|||||.||.||||||||||..||:||
RBAM_035670__    245 SDKPWNTGTSHPYRDHYFRYMSYTKWNTIDRPAMNQ    280


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