Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_05877 and RBAM_035670

See Amino acid alignment / Visit BSNT_05877 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:23
# Commandline: needle
#    -asequence dna-align/BSNT_05877___gspA.1.9828.seq
#    -bsequence dna-align/RBAM_035670___gspA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05877___gspA-RBAM_035670___gspA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05877___gspA-RBAM_035670___gspA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05877___gspA
# 2: RBAM_035670___gspA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 898
# Identity:     633/898 (70.5%)
# Similarity:   633/898 (70.5%)
# Gaps:          92/898 (10.2%)
# Score: 2236.5
# 
#
#=======================================

BSNT_05877___      1 TTGAGGAAAGATGAAATCATGCATATCGTATCATGCGCAGATGATAATTA     50
                                       |||||||||||||||||.||.||||||.||||
RBAM_035670__      1 ------------------ATGCATATCGTATCATGTGCCGATGATCATTA     32

BSNT_05877___     51 TGCTCGTCATTTAGGTGGGATGTTCGTTTCTTTATTGACTAACATGGAT-     99
                     ||||||||||||.|||||||||||||.|||||||||||..||.|||||| 
RBAM_035670__     33 TGCTCGTCATTTGGGTGGGATGTTCGCTTCTTTATTGATGAATATGGATA     82

BSNT_05877___    100 ---CAGGAGAGAGAGGTAAAATTATACGTCATTGATGGCGGAATTA-AGC    145
                        ||    ||.||.|..||||||||.||.||.||.|||||||||| .||
RBAM_035670__     83 AAACA----AGGGATGCGAAATTATATGTGATCGACGGCGGAATTACTGC    128

BSNT_05877___    146 CTGATAACAA-AAAAAGACTGGAAGAAACCACTTTGAAATTCGGAGTGCC    194
                     | ||.||||| .|.||| ||.|||.|.|||.|..||..||||||...|||
RBAM_035670__    129 C-GAAAACAAGGACAAG-CTTGAACAGACCGCGATGTCATTCGGGACGCC    176

BSNT_05877___    195 GATTGAGTTTTTAGAAGTGGA----TACCAACATGTATGAACATGCGGTA    240
                     |.||||.|||||||||||.||    .|.|||    ||..|.|||||.||.
RBAM_035670__    177 GCTTGAATTTTTAGAAGTAGACGCTGATCAA----TACAAGCATGCAGTC    222

BSNT_05877___    241 GAGAGCAGCCATATTACAAAAGCCGCGTATTACCGCATTTCGATTCCCGA    290
                     ||.||||||||.|||||||||||.||.||||||||||||||.||.||.||
RBAM_035670__    223 GAAAGCAGCCACATTACAAAAGCGGCTTATTACCGCATTTCCATCCCTGA    272

BSNT_05877___    291 CTTAATTAAGGATGAAAGCATCAAACGAATGATTTACATCGATTGCGATG    340
                     .||||||||||||||...|.|.||.||.|||||||||||.||||||||||
RBAM_035670__    273 TTTAATTAAGGATGAGTCCGTAAAGCGGATGATTTACATTGATTGCGATG    322

BSNT_05877___    341 CGCTTGTCCTAGAGGATATTTCTAAGTTATGGGACTTAGACATTGC----    386
                     |..||||..|.||.||||||||....|||||||||||.||.|||.|    
RBAM_035670__    323 CAATTGTGATGGAAGATATTTCGGTTTTATGGGACTTGGATATTTCCCCG    372

BSNT_05877___    387 GCCTTACACCGTAGCCGCTGTTGAGGATGCGGGGCAGCATGAACGCCTGA    436
                     ||..||    ||.||.||.||.||.||.||.||.|||||||||.|.||||
RBAM_035670__    373 GCAATA----GTTGCGGCGGTAGAAGACGCCGGACAGCATGAAAGGCTGA    418

BSNT_05877___    437 AAGAAATGAACGTCACTGATACAGGGAAGTATTTTAACTCAGGTATCATG    486
                     ||.|||||||..|||..||.||.|..|||||||||||.||.||.||.|||
RBAM_035670__    419 AAAAAATGAATATCAGCGACACTGCCAAGTATTTTAATTCCGGCATTATG    468

BSNT_05877___    487 ATTATTGATTTTGAGTCTTGGAGAAATCAAAACATCACAGAAAAAGTCAT    536
                     |||||.|||||.||..||||||||||.|||||.||..|.|||||.||.||
RBAM_035670__    469 ATTATAGATTTCGAACCTTGGAGAAAACAAAATATTTCCGAAAAGGTGAT    518

BSNT_05877___    537 CAACTTTATCAATGAACACCCAGAC---GAAGACTTTCTTGTGCTGCATG    583
                     ..|.|||||.||.|||.|  ||| |   ||.||.|||||.|||.|.||||
RBAM_035670__    519 TGATTTTATTAACGAAAA--CAG-CTCGGAGGATTTTCTCGTGTTTCATG    565

BSNT_05877___    584 ACCAAGATGCACTGAATGCGATCTTGTATGATCAGTGGTATGAACTTCAT    633
                     |.||.||.||.||.||.||||||||.||||||||.|||.|||||||.|||
RBAM_035670__    566 ATCAGGACGCGCTTAACGCGATCTTATATGATCAATGGCATGAACTGCAT    615

BSNT_05877___    634 CCGCGCTGGAACGCTCAAACCTATATCATGTTAAAGCTGAAAACCCCACC    683
                     ||||||||||||||.||.||..||||.||..|.||...||||||.||.||
RBAM_035670__    616 CCGCGCTGGAACGCGCAGACGCATATTATCATGAATGAGAAAACGCCTCC    665

BSNT_05877___    684 -GACTCTGTTAGGGCGGAAGCAATATAATGAAACG----AGAGAAA----    724
                      || .|||.|.|..||       |||      |||    |||||||    
RBAM_035670__    666 TGA-ACTGATCGACCG-------TAT------ACGTTACAGAGAAACACG    701

BSNT_05877___    725 -----ACCCGGCAATCGTGCACTTCTGCGGCGGAGAAAAGCCTTGGAACT    769
                          |.|||||.|||||.||.|||||||||.|.||.|||||||||    
RBAM_035670__    702 TGCCGAACCGGCCATCGTCCATTTCTGCGGCAGCGACAAGCCTTGG----    747

BSNT_05877___    770 CCAATACA------AAACATCCGTATCGCGATGAGTATTTCCATTACATG    813
                       ||||||      ...||.||||||||.|||.|.|||||||..||.|||
RBAM_035670__    748 --AATACAGGCACCTCGCACCCGTATCGTGATCATTATTTCCGATATATG    795

BSNT_05877___    814 TCCTATACGAAGTGGAATACGATTGGGAATCCGGCGATCAACCAATAA    861
                     |||||||||||.|||||.|||||.|.....|||||.||.||||||||.
RBAM_035670__    796 TCCTATACGAAATGGAACACGATCGACCGCCCGGCCATGAACCAATAG    843


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05877 and RBAM_035670

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
