Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05825 and RBAM_035320

See DNA alignment / Visit BSNT_05825 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:20
# Commandline: needle
#    -asequence pep-align/BSNT_05825___vpr.1.9828.seq
#    -bsequence pep-align/RBAM_035320___vpr.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05825___vpr-RBAM_035320___vpr.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05825___vpr-RBAM_035320___vpr.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05825___vpr
# 2: RBAM_035320___vpr
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity:     687/806 (85.2%)
# Similarity:   739/806 (91.7%)
# Gaps:           3/806 ( 0.4%)
# Score: 3598.0
# 
#
#=======================================

BSNT_05825___      1 MKKGIIRFLLVSFVLFFALSTGITGVQAAPASSKTSADLEKAEVFGDIDM     50
                     |||||||:||.:|||.|.||   |..||||||...:.|||||||||||||
RBAM_035320__      1 MKKGIIRYLLPAFVLSFTLS---TSSQAAPASKPQTPDLEKAEVFGDIDM     47

BSNT_05825___     51 TTSKKTTVIVELKEKSLAEAKEAGESQSKSKLKTARTKAKNKAIKAVKNG    100
                     ||.|:|||||||||||||||||.|::|:|||||:.|.|.|.||:|.:|:|
RBAM_035320__     48 TTGKQTTVIVELKEKSLAEAKELGKAQTKSKLKSERAKVKKKALKTIKHG     97

BSNT_05825___    101 KVNREYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDV    150
                     |:||||||||||||||||||||||||:.:|||||||||||.||.:||||:
RBAM_035320__     98 KINREYEQVFSGFSMKLPANEIPKLLSDQDVKAVYPNVTYHTDQLKDKDI    147

BSNT_05825___    151 TISEDAVSPQMDDSAPYIGANDAWDLGYTGKGIKVAIIDTGVEYNHPDLK    200
                     |:|:||||||||||||||||||||.|||||||:|||||||||||.|||||
RBAM_035320__    148 TLSKDAVSPQMDDSAPYIGANDAWKLGYTGKGVKVAIIDTGVEYKHPDLK    197

BSNT_05825___    201 KNFGQYKGYDFVDNDYDPKETPTGDPRGGATDHGTHVAGTVAANGTIKGV    250
                     ||||||||||||||||||:|||:|||||.:||||||||||||||||||||
RBAM_035320__    198 KNFGQYKGYDFVDNDYDPEETPSGDPRGASTDHGTHVAGTVAANGTIKGV    247

BSNT_05825___    251 APDATLLAYRVLGPGGSGTSENVIAGVERAVQDGADVMNLSLGNSLNNPD    300
                     |||||||||||||||||||:||||||:||||||||||||||||||:||||
RBAM_035320__    248 APDATLLAYRVLGPGGSGTTENVIAGIERAVQDGADVMNLSLGNSVNNPD    297

BSNT_05825___    301 WATSTALDWAMSEGVVAVTSNGNSGPNGWTVGSPGTSREAISVGATQLPL    350
                     |||||||||||||||.|||||||||||.||||||||||||||||||||||
RBAM_035320__    298 WATSTALDWAMSEGVTAVTSNGNSGPNNWTVGSPGTSREAISVGATQLPL    347

BSNT_05825___    351 NEYAVTFGSYSSAKVMGYNKEDDVKALNNKEVELVEAGIGEAKDFEGKDL    400
                     |||||:|||||||||||||||||:||||.||.:|:||||||.||||||||
RBAM_035320__    348 NEYAVSFGSYSSAKVMGYNKEDDIKALNKKETDLIEAGIGEQKDFEGKDL    397

BSNT_05825___    401 TGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPT    450
                     .|||||||||||||||||||||||||||||||||..|||||||||:||||
RBAM_035320__    398 KGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNAPGEIEANVPGLSVPT    447

BSNT_05825___    451 IKLSLEDGEKLVSALKAGETKTTFKLTVSKALGEQVADFSSRGPVMDTWM    500
                     ||||.||||||||.||||.||.||.|:|:|:|.||:||||||||||||||
RBAM_035320__    448 IKLSSEDGEKLVSQLKAGGTKATFNLSVAKSLTEQMADFSSRGPVMDTWM    497

BSNT_05825___    501 IKPDISAPGVNIVSTIPTHDPDHPYGYGSKQGTSMASPHIAGAVAVIKQA    550
                     ||||:||||||||||||||||..||||||||||||||||:|||.||||||
RBAM_035320__    498 IKPDVSAPGVNIVSTIPTHDPADPYGYGSKQGTSMASPHVAGAAAVIKQA    547

BSNT_05825___    551 KPKWSVEQIKTAIMNTAVTLKDSDGEVYPHNAQGAGSARIMNAIKADSLV    600
                     |||||.||||.|:||||.||.|:||:|||||||||||.|||.||||||||
RBAM_035320__    548 KPKWSPEQIKAALMNTAETLTDADGDVYPHNAQGAGSIRIMKAIKADSLV    597

BSNT_05825___    601 SPGSYSYGTFLKENGNETKNETFTIENQSSIRKSYTLEYSFNGSGISTSG    650
                     :|||||||||:|:.|||||.|||||||||||||||.|||||||:||:.||
RBAM_035320__    598 APGSYSYGTFMKDKGNETKKETFTIENQSSIRKSYQLEYSFNGTGITVSG    647

BSNT_05825___    651 TSRVVIPAHQTGKATAKVKVNTKKTKAGTYEGTVIVREGGKTVAKVPTLL    700
                     |.|||||||||||..||||||.||.|||||||||.|||||||||||||||
RBAM_035320__    648 TDRVVIPAHQTGKVNAKVKVNAKKVKAGTYEGTVTVREGGKTVAKVPTLL    697

BSNT_05825___    701 IVKEPDYPRVTSVSVSEGSVQGTYQIETYLPAGAEELAFLVYDSNLDFAG    750
                     ||||||||||||:.|.:|:.||||||||||||||||||||||||||||.|
RBAM_035320__    698 IVKEPDYPRVTSIDVQDGTTQGTYQIETYLPAGAEELAFLVYDSNLDFVG    747

BSNT_05825___    751 QAGIYKNQDKGYQYFDWDGTINGGTKLPAGEYYLLAYAANKGKSSQVLTE    800
                     ||||||.||||||||||:|.:||.|.|||||||:||||||||||||||||
RBAM_035320__    748 QAGIYKKQDKGYQYFDWNGKVNGDTALPAGEYYMLAYAANKGKSSQVLTE    797

BSNT_05825___    801 EPFTVE    806
                     :||.:|
RBAM_035320__    798 KPFIIE    803


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_05825 and RBAM_035320

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
