Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05825 and RBAM_035320
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:20
# Commandline: needle
# -asequence dna-align/BSNT_05825___vpr.1.9828.seq
# -bsequence dna-align/RBAM_035320___vpr.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05825___vpr-RBAM_035320___vpr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05825___vpr-RBAM_035320___vpr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05825___vpr
# 2: RBAM_035320___vpr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2445
# Identity: 1896/2445 (77.5%)
# Similarity: 1896/2445 (77.5%)
# Gaps: 57/2445 ( 2.3%)
# Score: 7284.0
#
#
#=======================================
BSNT_05825___ 1 TTGAAAAAGGGGATCATTCGCTTTCTGCTTGTAAGTTTTGTCTTATTTTT 50
||||||||.||.|||||.||.|.|||||||.....|||||||||||..||
RBAM_035320__ 1 TTGAAAAAAGGAATCATCCGTTATCTGCTTCCGGCTTTTGTCTTATCCTT 50
BSNT_05825___ 51 TGCGTTATCCACAGGTATTACGGGCGTC-CAGGCAGCTCCGGCTTCTTCA 99
|.|.|||||||||.|| || |||||.||.|||| |||||
RBAM_035320__ 51 TACCTTATCCACAAGT----------TCACAGGCTGCGCCGG---CTTCA 87
BSNT_05825___ 100 AAAACG-----TCGGCTGATCTGGAAAAAGCCGAGGTATTCGGTGATATC 144
|||.|| || |||||||.||.||.||.|||||.||||||||.||.
RBAM_035320__ 88 AAACCGCAAACTC--CTGATCTTGAGAAGGCTGAGGTGTTCGGTGACATT 135
BSNT_05825___ 145 GACATGACGACAAGCAAAAAAACAACCGTTATAGTGGAATTAAAAGAAAA 194
||.|||||.||..|||||.||||.||.||.||.|||||..|.||.|||||
RBAM_035320__ 136 GATATGACCACCGGCAAACAAACGACAGTCATCGTGGAGCTGAAGGAAAA 185
BSNT_05825___ 195 ATCCTTGGCAGAAGCGAAGGAA-GCGGGAGAAAGC-CAATCGAAAAGCAA 242
.||..||||.|||||.|||||| .||| .||||| ||..|.||||||||
RBAM_035320__ 186 GTCACTGGCGGAAGCAAAGGAACTCGG--CAAAGCACAGACAAAAAGCAA 233
BSNT_05825___ 243 GCTGAAAACCGCTCGCACCAAAGCAAAAAATAAAGCAATCAAAGCGGTGA 292
||||||||.||..|||.|.||||..|||||.|||||..|||||.|..|.|
RBAM_035320__ 234 GCTGAAAAGCGAACGCGCAAAAGTGAAAAAGAAAGCGCTCAAAACCATTA 283
BSNT_05825___ 293 AAAACGGAAAAGTAAACCGGGAATATGAGCAGGTATTCTCAGGCTTCTCT 342
||.||||||||.|.|||.|||||||||||||.||.||.||.||||||||.
RBAM_035320__ 284 AACACGGAAAAATCAACAGGGAATATGAGCAAGTGTTTTCCGGCTTCTCC 333
BSNT_05825___ 343 ATGAAGCTTCCAGCTAATGAGATTCCAAAACTTCTCGCG-GTAA--AAGA 389
|||||.||.||.||.|||||.||.||.|||||.|| | ||.| |.||
RBAM_035320__ 334 ATGAAACTCCCGGCAAATGAAATCCCCAAACTGCT---GAGTGATCAGGA 380
BSNT_05825___ 390 CGTTAAGGCGGTGTACCCGAACGTCACATATAAAACAGACAATATGAAGG 439
.||.||.|||||.||.|||||.|||||.|||.|.||.||..|..|.||.|
RBAM_035320__ 381 TGTCAAAGCGGTTTATCCGAATGTCACCTATCATACCGATCAGCTCAAAG 430
BSNT_05825___ 440 ATAAAGACGTCACAATCTCCGAAGACGCCGTATCTCCGCAAATGGATGAC 489
||||||||.||||..|.||..|.||.|||||.||||||||.|||||||||
RBAM_035320__ 431 ATAAAGACATCACCCTATCTAAGGATGCCGTGTCTCCGCAGATGGATGAC 480
BSNT_05825___ 490 AGTGCGCCTTATATCGGAGCAAACGATGCATGGGATTTAGGCTACACAGG 539
||.|||||||||||.||.|||||.||.||.|||.|..|.|||||.||.||
RBAM_035320__ 481 AGCGCGCCTTATATAGGGGCAAATGACGCGTGGAAGCTCGGCTATACGGG 530
BSNT_05825___ 540 AAAAGGCATTAAGGTGGCGATTATTGACACTGGGGTTGAATACAATCACC 589
.||||||.|.|||||.||.|||||||||||.||.||.|||||.||.||||
RBAM_035320__ 531 TAAAGGCGTCAAGGTTGCCATTATTGACACCGGTGTCGAATATAAACACC 580
BSNT_05825___ 590 CAGATCTGAAGAAAAACTTTGGACAATATAAAGGATACGATTTTGTGGAC 639
|.||..|.||||||||.||.|||||||||||||||||||||||||||||.
RBAM_035320__ 581 CTGACTTAAAGAAAAATTTCGGACAATATAAAGGATACGATTTTGTGGAT 630
BSNT_05825___ 640 AATGATTACGATCCAAAAGAAACACCAACAGGCGATCCGAGGGGCGGAGC 689
||.|||||||||||..|||||||.||..|.||.||||||||.||||...|
RBAM_035320__ 631 AACGATTACGATCCTGAAGAAACGCCGTCCGGTGATCCGAGAGGCGCGTC 680
BSNT_05825___ 690 GACTGACCACGGCACACACGTAGCCGGAACTGTGGCTGCAAACGGAACAA 739
||||||||||||.||.||.||.||.||.||.||.||.|||||||||||.|
RBAM_035320__ 681 GACTGACCACGGAACCCATGTCGCGGGCACGGTAGCGGCAAACGGAACGA 730
BSNT_05825___ 740 TTAAAGGCGTAGCGCCTGATGCCACACTTCTTGCTTATCGTGTGTTAGGG 789
|.||||||||.|||||.|||||.|||||.|||||.||.||||||.|.||.
RBAM_035320__ 731 TCAAAGGCGTCGCGCCGGATGCTACACTCCTTGCCTACCGTGTGCTCGGT 780
BSNT_05825___ 790 CCTGGCGGAAGCGGCACATCGGAAAACGTCATCGCCGGTGTGGAACGTGC 839
||.|||||||||||.|||.||||.||||||||||||||..|.|||||.||
RBAM_035320__ 781 CCGGGCGGAAGCGGAACAACGGAGAACGTCATCGCCGGCATCGAACGCGC 830
BSNT_05825___ 840 AGTGCAGGACGGGGCAGATGTGATGAACCTGTCTCTCGGAAACTCTTTAA 889
.||.||||||||.||.|||||.||||||||.||||||||.||.|||.|.|
RBAM_035320__ 831 CGTACAGGACGGAGCGGATGTCATGAACCTTTCTCTCGGCAATTCTGTGA 880
BSNT_05825___ 890 ACAACCCGGACTGGGCGACAAGCACAGCGCTTGACTGGGCCATGTCAGAA 939
|.|||||.|||||||||||||||||.||||||||||||||.|||||||||
RBAM_035320__ 881 ATAACCCAGACTGGGCGACAAGCACGGCGCTTGACTGGGCGATGTCAGAA 930
BSNT_05825___ 940 GGCGTTGTCGCTGTTACCTCAAACGGCAACAGCGGACCGAACGGCTGGAC 989
|||||....||.|||||.||||||||.|||||||||||||||...|||||
RBAM_035320__ 931 GGCGTCACGGCCGTTACATCAAACGGAAACAGCGGACCGAACAATTGGAC 980
BSNT_05825___ 990 AGTCGGATCGCCGGGCACATCCAGAGAAGCGATTTCTGTCGGTGCGACTC 1039
.|||||.||.|||||.||.|||||||||||.||.||.|||||.|||||.|
RBAM_035320__ 981 CGTCGGTTCTCCGGGAACGTCCAGAGAAGCCATCTCCGTCGGAGCGACAC 1030
BSNT_05825___ 1040 AGCTGCCGCTCAATGAATACGCCGTCACTTTCGGCTCCTATTCTTCAGCA 1089
||||||||||.||.||.|||||||||.|.|||||.||||||||.|||||.
RBAM_035320__ 1031 AGCTGCCGCTGAACGAGTACGCCGTCTCCTTCGGTTCCTATTCCTCAGCG 1080
BSNT_05825___ 1090 AAAGTGATGGGCTATAACAAAGAGGACGACGTCAAAGCGCTCAATAACAA 1139
|||||.||||||||.||||||||.||.|||.|.|||||.||.|||||.||
RBAM_035320__ 1081 AAAGTAATGGGCTACAACAAAGAAGATGACATAAAAGCACTGAATAAAAA 1130
BSNT_05825___ 1140 AGAAGTTGAGCTTGTCGAAGCGGGAATCGGCGAAGC-AAAGGATTTTGAA 1188
||||...||.||..|.||.|||||.||||||| ||| |||||||||||||
RBAM_035320__ 1131 AGAAACAGACCTCATAGAGGCGGGTATCGGCG-AGCAAAAGGATTTTGAA 1179
BSNT_05825___ 1189 GGGAAAGACCTGACAGGCAAAGTCGCCGTTGTCAAACGAGGCAGCATTGC 1238
||.|||||.||||.|||.||||||||.||.||||||||.||||||||.||
RBAM_035320__ 1180 GGCAAAGATCTGAAAGGAAAAGTCGCGGTCGTCAAACGGGGCAGCATCGC 1229
BSNT_05825___ 1239 ATTTGTGGATAAAGCGGATAACGCTAAAAAAGCCGGTGCCATCGGCATGG 1288
.||||||||||||||.||.|||||.||||||||.||.||.|||||.||||
RBAM_035320__ 1230 CTTTGTGGATAAAGCAGACAACGCCAAAAAAGCGGGCGCGATCGGTATGG 1279
BSNT_05825___ 1289 TTGTGTATAACAATCTCTCTGGAGAAATTGAAGCCAATGTGCCAGGCATG 1338
||||||||||||||..|.|.|||||||||||||||||.||.||.|||.||
RBAM_035320__ 1280 TTGTGTATAACAATGCCCCGGGAGAAATTGAAGCCAACGTACCGGGCTTG 1329
BSNT_05825___ 1339 TCTGTCCCAACGATTAAGCTTTCATTAGAAGACGGCGAAAAACTCGTCAG 1388
||.||.||.||||||||||||||||.||||||||||||||||||||||||
RBAM_035320__ 1330 TCCGTACCGACGATTAAGCTTTCATCAGAAGACGGCGAAAAACTCGTCAG 1379
BSNT_05825___ 1389 CGCCCTGAAAGCTGGTGAGACAAAAACAACATTCAAGTTGACGGTCTCAA 1438
|....|.|||||.||.|..||||||.|.||.|||||.||..|.||..|.|
RBAM_035320__ 1380 CCAATTAAAAGCAGGCGGCACAAAAGCGACTTTCAATTTATCCGTGGCTA 1429
BSNT_05825___ 1439 AAGCGCTCGGTGAACAAGTCGCTGATTTCTCATCACGCGGTCCTGTTATG 1488
||.|||||..|||||||.|.||.||.||.||.|||||||||||.||||||
RBAM_035320__ 1430 AATCGCTCACTGAACAAATGGCAGACTTTTCGTCACGCGGTCCGGTTATG 1479
BSNT_05825___ 1489 GATACGTGGATGATTAAGCCTGATATTTCCGCGCCAGGGGTCAATATCGT 1538
||.||||||||||||||.|||||..|.|||||.||.||.||.||.|||||
RBAM_035320__ 1480 GACACGTGGATGATTAAACCTGACGTCTCCGCTCCCGGCGTAAACATCGT 1529
BSNT_05825___ 1539 GAGCACGATCCCAACACACGATCCTGACCATCCATACGGCTACGGATCAA 1588
.|||||.||.||.||.||.|||||.|.|.|.||.||||||||||||||.|
RBAM_035320__ 1530 CAGCACCATTCCGACCCATGATCCGGCCGACCCGTACGGCTACGGATCGA 1579
BSNT_05825___ 1589 AACAAGGAACAAGCATGGCATCGCCTCATATTGCCGGAGCGGTTGCCGTT 1638
|.||.|||||.||||||||.||.||.|||.|.|||||.||.|.||||||.
RBAM_035320__ 1580 AGCAGGGAACGAGCATGGCTTCCCCGCATGTAGCCGGCGCAGCTGCCGTC 1629
BSNT_05825___ 1639 ATTAAACAAGCCAAACCAAAGTGGAGCGTTGAACAGATTAAAACCGCCAT 1688
||.||.||.||||||||.||.||||||...|||||.||.|||.||||..|
RBAM_035320__ 1630 ATCAAGCAGGCCAAACCGAAATGGAGCCCGGAACAAATAAAAGCCGCTCT 1679
BSNT_05825___ 1689 CATGAATACCGCTGTCACTTTAAAGGATAGC-GATGGGGAAGTATATCCG 1737
||||||.|||||.|..||.||||.||| .|| ||.||.||.|||||.|||
RBAM_035320__ 1680 CATGAACACCGCGGAAACCTTAACGGA-CGCGGACGGTGACGTATACCCG 1728
BSNT_05825___ 1738 CATAACGCTCAAGGCGCAGGCAGCGCAAGAATCATGAACGCAATCAAAGC 1787
|||||.||.||||||||.||.|||...|||||||||||.||.||||||||
RBAM_035320__ 1729 CATAATGCGCAAGGCGCCGGAAGCATCAGAATCATGAAGGCGATCAAAGC 1778
BSNT_05825___ 1788 CGATTCGCTCGTCTCACCTGGAAGCTATTCATACGGCACGTTCTTGAAGG 1837
.||.||.||.|||.|.||.|||||.|||||.|||||.|||||..||||.|
RBAM_035320__ 1779 AGACTCCCTTGTCGCCCCGGGAAGTTATTCTTACGGAACGTTTATGAAAG 1828
BSNT_05825___ 1838 AAAACGGAAACGAAACAAAAAATGAAACGTTTACGATTGAAAATCAATCT 1887
|.||.||.||.|||||.|||||.|||||.||||||||||||||||||||.
RBAM_035320__ 1829 ACAAAGGCAATGAAACGAAAAAAGAAACCTTTACGATTGAAAATCAATCG 1878
BSNT_05825___ 1888 TCCATTAGAAAGTCTTA-CACACTTGAATACTCATTTAATGGCAGCGGCA 1936
|||||.|||||.||.|| || .||.||.|||||.||.||.||||..||||
RBAM_035320__ 1879 TCCATCAGAAAATCATATCA-GCTCGAGTACTCTTTCAACGGCACGGGCA 1927
BSNT_05825___ 1937 TTTCCACATCCGGCACAAGCCGTGTTGTGATTCCGGCACATCAAACCGGG 1986
||.||...||.||||||..|||.||.|||||.||.||.|||||||||||.
RBAM_035320__ 1928 TTACCGTTTCGGGCACAGACCGGGTCGTGATCCCCGCTCATCAAACCGGA 1977
BSNT_05825___ 1987 AAAGCCACTGCAAAAGTAAAGGTCAATACGAAGAAAACAAAAGCTGGCAC 2036
||.|.||.|||.|||||||||||||||.|.||.|||..|||.||.|||||
RBAM_035320__ 1978 AAGGTCAATGCGAAAGTAAAGGTCAATGCCAAAAAAGTAAAGGCAGGCAC 2027
BSNT_05825___ 2037 CTATGAAGGAACGGTTATCGTCAGAGAAGGCGGAAAAACGGTCGCTAAGG 2086
||||||.|||||.||.|..||..||||||||||||||||.|||||.||.|
RBAM_035320__ 2028 CTATGAGGGAACCGTCACAGTGCGAGAAGGCGGAAAAACAGTCGCAAAAG 2077
BSNT_05825___ 2087 TACCTACATTGCTGATTGTGAAAGAGCCCGATTATCCGAGAGTCACATCT 2136
|.||.||..||||||||||.||||||||.||.||||||.|.||.||
RBAM_035320__ 2078 TGCCGACGCTGCTGATTGTAAAAGAGCCGGACTATCCGCGCGTGAC---- 2123
BSNT_05825___ 2137 GTCTCTGTC-AGCGAAG----GGTCTGTACAA-----GGTACCTATCAAA 2176
||| |.|||.| ||.|.|.|||| ||.|||||.||||
RBAM_035320__ 2124 ------GTCAATCGACGTGCAGGACGGCACAACGCAGGGAACCTACCAAA 2167
BSNT_05825___ 2177 TTGAAACCTACCTTCCTGCGGGAGCGGAAGAGCTGGCGTTCCTCGTCTAT 2226
||||||||||.|||||.||||||||.||||||||.||.|||||.||.|||
RBAM_035320__ 2168 TTGAAACCTATCTTCCGGCGGGAGCCGAAGAGCTTGCCTTCCTTGTATAT 2217
BSNT_05825___ 2227 GACAGCAACCTTGATTTCGCAGGCCAAGCCGGCATTTATAAAAACCAAGA 2276
||||||||.|||||.||.|..||||||||||||||.||.|||||.||.||
RBAM_035320__ 2218 GACAGCAATCTTGACTTTGTCGGCCAAGCCGGCATCTACAAAAAGCAGGA 2267
BSNT_05825___ 2277 TAAAGGTTACCAGTACTTTGACTGGGACGGCACGATTAATGGCGGAACCA 2326
||||||.||.||.||.||.||||||.||||||...|.|||||.|..|||.
RBAM_035320__ 2268 TAAAGGCTATCAATATTTCGACTGGAACGGCAAAGTCAATGGTGACACCG 2317
BSNT_05825___ 2327 AACTTCCGGCCGGAGAGTATTACTTGCTCGCATATGCCGCGAACAAAGGC 2376
.|||.|||||.|||||.|||||..||||.||.|||||||||||||||||.
RBAM_035320__ 2318 CACTGCCGGCAGGAGAATATTATATGCTGGCCTATGCCGCGAACAAAGGG 2367
BSNT_05825___ 2377 AAGTCAAGCCAGGTTTTGACCGAAGAACCTTTCACTGTGGAATAA 2421
||.|||||||||||..||||.|||.|||||||.|...|.||||||
RBAM_035320__ 2368 AAATCAAGCCAGGTGCTGACTGAAAAACCTTTTATCATTGAATAA 2412
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.