Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05816 and RBAM_035270

See DNA alignment / Visit BSNT_05816 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:19
# Commandline: needle
#    -asequence pep-align/BSNT_05816___ywdA.1.9828.seq
#    -bsequence pep-align/RBAM_035270___ywdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05816___ywdA-RBAM_035270___ywdA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05816___ywdA-RBAM_035270___ywdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05816___ywdA
# 2: RBAM_035270___ywdA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 83
# Identity:      51/83 (61.4%)
# Similarity:    60/83 (72.3%)
# Gaps:           5/83 ( 6.0%)
# Score: 245.0
# 
#
#=======================================

BSNT_05816___      1 MNIHEQKITPEC-LEKAANQVEDKREEYKDVLLQLKKMLGGTTPHSETAE     49
                       :..||:||:| |.|||.||||||||||:|||||.:||....||:|.::
RBAM_035270__      1 --MKNQKMTPKCLLVKAAEQVEDKREEYKEVLLQLNRMLKRAEPHNEWSD     48

BSNT_05816___     50 ILTRAYEQMKEYALFVQSIETFLRKSANNLKIK     82
                     .|...|||||||||||||||.|||.||..:|  
RBAM_035270__     49 RLMHTYEQMKEYALFVQSIEMFLRSSAKKMK--     79


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.