Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05816 and RBAM_035270

See Amino acid alignment / Visit BSNT_05816 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:19
# Commandline: needle
#    -asequence dna-align/BSNT_05816___ywdA.1.9828.seq
#    -bsequence dna-align/RBAM_035270___ywdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05816___ywdA-RBAM_035270___ywdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05816___ywdA-RBAM_035270___ywdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05816___ywdA
# 2: RBAM_035270___ywdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 267
# Identity:     178/267 (66.7%)
# Similarity:   178/267 (66.7%)
# Gaps:          45/267 (16.9%)
# Score: 606.0
# 
#
#=======================================

BSNT_05816___      1 TTGAATATACATGAACAGAAGATAACACCGGAATGT----TTGGAAAAGG     46
                     |||||.|      |.||||||||.||.|||.|||||    |||..||| |
RBAM_035270__      1 TTGAAAA------ATCAGAAGATGACGCCGAAATGTTTACTTGTCAAA-G     43

BSNT_05816___     47 CTGCTAACCAAGTTGAAGATAAGCGGGAAGAATATAAGGATGTGCTGCTT     96
                     |.||..|.|||||.|||||||||||||||||||||||.||.||..|||||
RBAM_035270__     44 CCGCAGAGCAAGTGGAAGATAAGCGGGAAGAATATAAAGAAGTATTGCTT     93

BSNT_05816___     97 CAGCTGAAAAAAATGCTTGGCGGAACAA--------CGCCGCACAGTGAA    138
                     ||||||||....|||||        |||        .|||.||||.|| |
RBAM_035270__     94 CAGCTGAATCGCATGCT--------CAAGAGAGCTGAGCCTCACAATG-A    134

BSNT_05816___    139 ACGG------CGGAAATTCTCACGCGGGCATATGAACAAATGAAGGAATA    182
                     |.||      |||     ||.|.||...||||||||||.|||||||||||
RBAM_035270__    135 ATGGAGTGATCGG-----CTGATGCATACATATGAACAGATGAAGGAATA    179

BSNT_05816___    183 TGCACTTTTTGTTCAGTCGATAGAAACATTTTTGAGGAAATCTGCAAACA    232
                     |||.||.|||||.|||||.||.||.|..||||||.||..|||.||.||  
RBAM_035270__    180 TGCGCTGTTTGTGCAGTCTATTGAGATGTTTTTGCGGTCATCCGCGAA--    227

BSNT_05816___    233 ATTTAAAAATTAAATAA    249
                         ||||||.||||||
RBAM_035270__    228 ----AAAAATGAAATAA    240


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