Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05815 and RBAM_035260

See DNA alignment / Visit BSNT_05815 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:19
# Commandline: needle
#    -asequence pep-align/BSNT_05815___thiD.1.9828.seq
#    -bsequence pep-align/RBAM_035260___thiD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05815___thiD-RBAM_035260___thiD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05815___thiD-RBAM_035260___thiD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05815___thiD
# 2: RBAM_035260___thiD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 271
# Identity:     252/271 (93.0%)
# Similarity:   263/271 (97.0%)
# Gaps:           1/271 ( 0.4%)
# Score: 1281.0
# 
#
#=======================================

BSNT_05815___      1 MSMNKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVIVAMDPNNSW     50
                     |||:||||||||||||||||||||||||||||||||||||||||||.|||
RBAM_035260__      1 MSMHKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVIVAMDPENSW     50

BSNT_05815___     51 DHQVFPIDTDTIRAQLATITDGIGVDAMKTGMLPTVDIIELAAKTIKEKQ    100
                     ||||||||.||||||||||.||||||||||||||||:|||||||||||||
RBAM_035260__     51 DHQVFPIDADTIRAQLATIVDGIGVDAMKTGMLPTVEIIELAAKTIKEKQ    100

BSNT_05815___    101 LKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLATVITPNLFEASQLSG    150
                     ||||||||||||||||||||||||:|||.|||||||||||||||||||||
RBAM_035260__    101 LKNVVIDPVMVCKGANEVLYPEHAEALRTQLAPLATVITPNLFEASQLSG    150

BSNT_05815___    151 MDELKTVDDMIEAAKKIHALGAQYVVITGGGKLKHEKAVDVLYDGETAEV    200
                     |||||||:||.|||||||.|||:||:||||||||||||:|||||||||||
RBAM_035260__    151 MDELKTVEDMKEAAKKIHELGAKYVLITGGGKLKHEKAIDVLYDGETAEV    200

BSNT_05815___    201 LESEMIDTPYTHGAGCTFSAAVTAELAKGAEVKEAIYAAKEFITAAIKES    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_035260__    201 LESEMIDTPYTHGAGCTFSAAVTAELAKGAEVKEAIYAAKEFITAAIKES    250

BSNT_05815___    251 FPLNQYVGPTKHSALRLNQQS    271
                     ||||||:|||||||:||:.: 
RBAM_035260__    251 FPLNQYIGPTKHSAMRLSGK-    270


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