Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05815 and RBAM_035260

See Amino acid alignment / Visit BSNT_05815 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:19
# Commandline: needle
#    -asequence dna-align/BSNT_05815___thiD.1.9828.seq
#    -bsequence dna-align/RBAM_035260___thiD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05815___thiD-RBAM_035260___thiD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05815___thiD-RBAM_035260___thiD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05815___thiD
# 2: RBAM_035260___thiD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 821
# Identity:     657/821 (80.0%)
# Similarity:   657/821 (80.0%)
# Gaps:          13/821 ( 1.6%)
# Score: 2658.5
# 
#
#=======================================

BSNT_05815___      1 ATGTCTATGAATAAAGCACTCACCATTGCCGGCTCAGATTCCAGCGGCGG     50
                     |||||.|||.|.||||||||.||.||||||||.||.||||||||||||||
RBAM_035260__      1 ATGTCAATGCACAAAGCACTTACTATTGCCGGTTCTGATTCCAGCGGCGG     50

BSNT_05815___     51 TGCTGGGATTCAAGCTGATTTAAAAACATTTCAAGAAAAAAACGTATACG    100
                     .||.||.|||||.||.||||||||||||||||||||||||||||||||||
RBAM_035260__     51 CGCAGGAATTCAGGCCGATTTAAAAACATTTCAAGAAAAAAACGTATACG    100

BSNT_05815___    101 GGATGACCGCCTTAACGGTGATCGTTGCGATGGACCCAAACAACAGCTGG    150
                     |.|||||.||.||.||.||||||||.|||||||||||..|.|||||||||
RBAM_035260__    101 GAATGACGGCTTTGACCGTGATCGTAGCGATGGACCCGGAGAACAGCTGG    150

BSNT_05815___    151 GACCATCAGGTATTCCCGATCGATACTGATACAATCCGCGCCCAGCTTGC    200
                     ||.|||||.|||||.|||||||||.|.|||||.||.|||||.|||||.||
RBAM_035260__    151 GATCATCAAGTATTTCCGATCGATGCCGATACGATTCGCGCACAGCTGGC    200

BSNT_05815___    201 AACAATTACGGACGGCATCGGCGTGGACGCCATGAAAACAGGAATGCTGC    250
                     .||.|||...|||||.||||||||.||||||||||||||.||||||||.|
RBAM_035260__    201 GACGATTGTTGACGGAATCGGCGTAGACGCCATGAAAACGGGAATGCTCC    250

BSNT_05815___    251 CAACCGTTGACATTATCGAGCTTGCGGCAAAAACGATCAAAGAAAAACAA    300
                     |.|||||.||.||.||.|||||||||||.||||||||.|||||||||||.
RBAM_035260__    251 CTACCGTGGAGATCATAGAGCTTGCGGCGAAAACGATTAAAGAAAAACAG    300

BSNT_05815___    301 TTAAAAAATGTGGTAATTGACCCTGTTATGGTTTGCAAAGGTGCTAATGA    350
                     .|.||.|||||.||.||.||.|||||.|||||.||||||||.||.||.||
RBAM_035260__    301 CTGAAGAATGTCGTTATCGATCCTGTCATGGTCTGCAAAGGAGCGAACGA    350

BSNT_05815___    351 AGTCCTTTATCCGGAGCACGCCCAAGCCCTGCGTGAGCAATTGGCTCCGC    400
                     |||.||.|||||||||||.|||.||||.||.||....||||||||.||.|
RBAM_035260__    351 AGTGCTGTATCCGGAGCATGCCGAAGCGCTTCGCACCCAATTGGCGCCTC    400

BSNT_05815___    401 TAGCCACTGTCATTACGCCAAACTTGTTTGAAGCCAGCCAGCTCAGCGGC    450
                     |.||.||.|||||.|||||||||.||||||||||.||||||.|.|||||.
RBAM_035260__    401 TGGCAACCGTCATCACGCCAAACCTGTTTGAAGCAAGCCAGTTGAGCGGT    450

BSNT_05815___    451 ATGGATGAACTAAAAACAGTTGACGATATGATCGAAGCCGCGAAAAAAAT    500
                     |||||||||.|||||||.||.||.||.||||..|||||.||.||.|||||
RBAM_035260__    451 ATGGATGAATTAAAAACGGTGGAAGACATGAAAGAAGCGGCCAAGAAAAT    500

BSNT_05815___    501 TCACGCACTCGGCGCTCAATATGTCGTCATTACAGGCGGAGGCAAACTCA    550
                     |||||.|||||||||..|||||||..|.||||||||||||||||||.|.|
RBAM_035260__    501 TCACGAACTCGGCGCGAAATATGTATTGATTACAGGCGGAGGCAAATTGA    550

BSNT_05815___    551 AACATGAGAAAGCCGTTGATGTTCTCTATGACGGAGAAACAGCGGAAGTC    600
                     |||||||.|||||..|.||.||.||.||||||||||||||.||||||||.
RBAM_035260__    551 AACATGAAAAAGCGATCGACGTGCTGTATGACGGAGAAACCGCGGAAGTA    600

BSNT_05815___    601 CTTGAAAGCGAAATGATCGATACGCCTTATACACATGGCGCAGGCTGTAC    650
                     .|.||||||||||||||.|||||.|||||.||.||.||.||.||.||.||
RBAM_035260__    601 TTAGAAAGCGAAATGATTGATACACCTTACACGCACGGAGCCGGATGCAC    650

BSNT_05815___    651 GTTCTCAGCAGCCGTGACAGCGGAGCTTGCCAAAGGTGCGGAAGTCAAAG    700
                     .|||||.||.||||||||.||.||.||.||||||||.||.|||||.||.|
RBAM_035260__    651 ATTCTCCGCCGCCGTGACGGCAGAACTGGCCAAAGGCGCTGAAGTGAAGG    700

BSNT_05815___    701 AAGCCATTTACGCAGCGAAAGAATTCATCACAGCGGCCATTAAAGAATCC    750
                     |||||||.||.||.||.||||||||.|||||.|||||.||.|||||||||
RBAM_035260__    701 AAGCCATCTATGCGGCAAAAGAATTTATCACCGCGGCAATCAAAGAATCC    750

BSNT_05815___    751 TTCCCGCTAAACCAGTATGTTGGTCCTACGAAGCATTCTGCACTGCGCCT    800
                     ||||||||.|||||.||..|.||.||.||.||.|||||.||..||||.||
RBAM_035260__    751 TTCCCGCTGAACCAATACATCGGACCGACTAAACATTCGGCGATGCGTCT    800

BSNT_05815___    801 -----GAATCAACAATCATAA    816
                          |||  ||.||      
RBAM_035260__    801 TAGCGGAA--AATAA------    813


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