Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05804 and RBAM_035170
See
DNA alignment /
Visit
BSNT_05804 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:18
# Commandline: needle
# -asequence pep-align/BSNT_05804___ywdL.1.9828.seq
# -bsequence pep-align/RBAM_035170___ywdL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05804___ywdL-RBAM_035170___ywdL.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05804___ywdL-RBAM_035170___ywdL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05804___ywdL
# 2: RBAM_035170___ywdL
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 190
# Identity: 152/190 (80.0%)
# Similarity: 159/190 (83.7%)
# Gaps: 16/190 ( 8.4%)
# Score: 749.0
#
#
#=======================================
BSNT_05804___ 1 MKPKKNQYQQMQAFD-----NMQGYQPQFGANPYPQ-QGQGSQMQPMGMQ 44
||||||||||||... :|||||||.|.||||| |||||||.||..|
RBAM_035170__ 1 MKPKKNQYQQMQGMGMGMGMDMQGYQPQLGPNPYPQPQGQGSQMMPMQQQ 50
BSNT_05804___ 45 PMMPMQQGQQGQQGQQGFGFPG--QQQGGG-FQIPSGPTPSGPGQSVPGM 91
..||||||||...| |||| |||||| |||||||:.| |:||||
RBAM_035170__ 51 MTMPMQQGQQSFGG----GFPGQPQQQGGGSFQIPSGPSSS---QNVPGM 93
BSNT_05804___ 92 LPVEESYIENILRLNRGKTATIYMTFENSKEWGSKIFRGVIEAAGRDHII 141
||:|||||||||||||||||||||||||||||.||||||||:||||||||
RBAM_035170__ 94 LPIEESYIENILRLNRGKTATIYMTFENSKEWNSKIFRGVIQAAGRDHII 143
BSNT_05804___ 142 ISDPKSGTRYLLLTIYLDYITFDEEIAYTYPYSMASYSPR 181
|||||:||||||||||||||||||||||||||||:|||||
RBAM_035170__ 144 ISDPKTGTRYLLLTIYLDYITFDEEIAYTYPYSMSSYSPR 183
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.