Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05804 and RBAM_035170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:18
# Commandline: needle
# -asequence dna-align/BSNT_05804___ywdL.1.9828.seq
# -bsequence dna-align/RBAM_035170___ywdL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05804___ywdL-RBAM_035170___ywdL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05804___ywdL-RBAM_035170___ywdL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05804___ywdL
# 2: RBAM_035170___ywdL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 585
# Identity: 424/585 (72.5%)
# Similarity: 424/585 (72.5%)
# Gaps: 72/585 (12.3%)
# Score: 1604.5
#
#
#=======================================
BSNT_05804___ 1 ATGAAACCGAAAAAAAATCAATATCAGCAAATGCAGGCATTTGAT----- 45
||||||||||||||.|||||||||||||||||||||| .|||
RBAM_035170__ 1 ATGAAACCGAAAAAGAATCAATATCAGCAAATGCAGG----GGATGGGGA 46
BSNT_05804___ 46 --------------AATATGCAGGGGTATCAGCCTCAGTTTGGCGCC-AA 80
.|||||||.||.||.|||||.|||.|.|| ||| ||
RBAM_035170__ 47 TGGGAATGGGAATGGATATGCAAGGATACCAGCCGCAGCTCGG-GCCTAA 95
BSNT_05804___ 81 CCCGTACCCGCAG---CAAGGCCAAGGCTCACAAATGCAGCCAATGGGGA 127
.||.||.|||||| ||.||||||||.|||||||||..|||.|| |.
RBAM_035170__ 96 TCCTTATCCGCAGCCTCAGGGCCAAGGATCACAAATGATGCCGAT---GC 142
BSNT_05804___ 128 TGCAGCCAATG---ATGCCAATGCAGCAGGGACAGCAAGGACAACAAGGA 174
.|||||.|||| |||||.||||||||.|||||||| ||
RBAM_035170__ 143 AGCAGCAAATGACAATGCCGATGCAGCAAGGACAGCA-----------GA 181
BSNT_05804___ 175 ----CAGCAGGGATTTGGATTCCCGGGC------CAGCAGCAGGGCGGCG 214
|.||.|| ||.|||||.||| ||||||||||||||||
RBAM_035170__ 182 GCTTCGGCGGG-----GGGTTCCCCGGCCAGCCGCAGCAGCAGGGCGGCG 226
BSNT_05804___ 215 ---GTTTTCAAATTCCATCGGGGCCTACACCGTCAGGACCGGGCCAAAGC 261
|.|||||.|||||.||.||.||..||.||||| ||||.|
RBAM_035170__ 227 GCAGCTTTCAGATTCCGTCAGGTCCATCATCGTCA---------CAAAAC 267
BSNT_05804___ 262 GTTCCCGGCATGCTGCCTGTTGAGGAATCTTACATCGAGAATATTTTGCG 311
|||||||||||||||||..||||.||.||.|||||.||.||||||.||||
RBAM_035170__ 268 GTTCCCGGCATGCTGCCGATTGAAGAGTCATACATTGAAAATATTCTGCG 317
BSNT_05804___ 312 CCTGAATCGGGGAAAAACGGCCACCATTTATATGACATTTGAAAACAGCA 361
..||||.|||||.||||||||.||.|||||||||||||||||||||||||
RBAM_035170__ 318 GTTGAACCGGGGCAAAACGGCGACGATTTATATGACATTTGAAAACAGCA 367
BSNT_05804___ 362 AGGAATGGGGCTCGAAGATTTTTCGCGGCGTCATCGAAGCTGCAGGCCGG 411
|.||||||...||.||||||||.|||||.||.||..|.||.||.||.||.
RBAM_035170__ 368 AAGAATGGAATTCAAAGATTTTCCGCGGTGTGATTCAGGCGGCGGGACGT 417
BSNT_05804___ 412 GATCACATTATTATCAGCGACCCGAAATCAGGAACACGCTACCTGCTCCT 461
||.||.||.||.|||||||||||||||.|.||.||.|||||.|||||.||
RBAM_035170__ 418 GACCATATCATCATCAGCGACCCGAAAACGGGCACCCGCTATCTGCTTCT 467
BSNT_05804___ 462 GACAATCTACCTCGATTACATTACATTTGATGAAGAAATTGCTTATACGT 511
|||.||.|||||.||||||||.||.||||||||.|||||.||||||||.|
RBAM_035170__ 468 GACCATTTACCTTGATTACATCACGTTTGATGAGGAAATCGCTTATACTT 517
BSNT_05804___ 512 ATCCATATTCCATGGCGTCCTATTCGCCAAGATAA 546
||||.||.||||||.|.||.|||||.||.||||||
RBAM_035170__ 518 ATCCGTACTCCATGTCTTCTTATTCTCCGAGATAA 552
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