Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05787 and RBAM_035060

See DNA alignment / Visit BSNT_05787 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:17
# Commandline: needle
#    -asequence pep-align/BSNT_05787___spsL.1.9828.seq
#    -bsequence pep-align/RBAM_035060___spsL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05787___spsL-RBAM_035060___spsL.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05787___spsL-RBAM_035060___spsL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05787___spsL
# 2: RBAM_035060___spsL
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 153
# Identity:     137/153 (89.5%)
# Similarity:   146/153 (95.4%)
# Gaps:           2/153 ( 1.3%)
# Score: 760.0
# 
#
#=======================================

BSNT_05787___      1 --MIDGVKVKKLMKHSDDRGFFAELVRDDENLLEHFGQASWSKSYPGVIK     48
                       :|:|||||||:|||||||||:|||||||:|||.|||||||||||||||
RBAM_035060__      1 MQVIEGVKVKKLIKHSDDRGFFSELVRDDEHLLERFGQASWSKSYPGVIK     50

BSNT_05787___     49 AFHYHEKQDDLWFFPTGHAQVVLYDLREDSKTKGETDVYYMGEDNPMLLL     98
                     |||||||||||||||||||||||:||||:|.|||||||||||||||||||
RBAM_035060__     51 AFHYHEKQDDLWFFPTGHAQVVLHDLREESATKGETDVYYMGEDNPMLLL    100

BSNT_05787___     99 IPKGVAHGYRVLGETPLTIIYFTTMSYNPDQPDEKRIPWNDETIGFNWNT    148
                     |||||||||||||||||||||||||||||||||||||||||:||||:|.|
RBAM_035060__    101 IPKGVAHGYRVLGETPLTIIYFTTMSYNPDQPDEKRIPWNDDTIGFDWQT    150

BSNT_05787___    149 EFR    151
                     ..|
RBAM_035060__    151 AHR    153


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.