Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05787 and RBAM_035060

See Amino acid alignment / Visit BSNT_05787 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:17
# Commandline: needle
#    -asequence dna-align/BSNT_05787___spsL.1.9828.seq
#    -bsequence dna-align/RBAM_035060___spsL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05787___spsL-RBAM_035060___spsL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05787___spsL-RBAM_035060___spsL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05787___spsL
# 2: RBAM_035060___spsL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 464
# Identity:     360/464 (77.6%)
# Similarity:   360/464 (77.6%)
# Gaps:          10/464 ( 2.2%)
# Score: 1403.0
# 
#
#=======================================

BSNT_05787___      1 ------GTGATTGATGGAGTCAAGGTGAAAAAATTGATGAAGCATAGCGA     44
                           |||||.||.||.||.||.||.|||||..||||.||.||.|||||
RBAM_035060__      1 GTGCAAGTGATCGAAGGCGTAAAAGTCAAAAAGCTGATCAAACACAGCGA     50

BSNT_05787___     45 TGACAGAGGCTTTTTTGCTGAGCTGGTCCGGGACGATGAGAATCTCCTTG     94
                     ||||.|.||.|||||..|.||.||.|||||.||||||||..|||||.|.|
RBAM_035060__     51 TGACCGGGGTTTTTTCTCAGAACTCGTCCGTGACGATGAACATCTCTTAG    100

BSNT_05787___     95 AGCATTTTGGGCAGGCCTCTTGGTCGAAAAGCTATCCGGGTGTGATTAAG    144
                     |||.|||.||||||||.||.|||||.|||||||||||.||.||.|||||.
RBAM_035060__    101 AGCGTTTCGGGCAGGCTTCCTGGTCCAAAAGCTATCCCGGCGTCATTAAA    150

BSNT_05787___    145 GCATTTCATTATCATGAGAAGCAGGATGATCTCTGGTTCTTCCCAACCGG    194
                     ||||||||.|||||||||||.||||||||.||.|||||.||.||.||.||
RBAM_035060__    151 GCATTTCACTATCATGAGAAACAGGATGACCTATGGTTTTTTCCGACGGG    200

BSNT_05787___    195 CCACGCTCAGGTTGTCCTATACGATCTTCGAGAGGATTCAAAGACAAAAG    244
                     ||||||.|||||.||.||..|.||.|||||.||.||.||....||.||.|
RBAM_035060__    201 CCACGCCCAGGTCGTGCTGCATGACCTTCGCGAAGAGTCTGCAACCAAGG    250

BSNT_05787___    245 GAGAAACGGACGTCTATTATATGGGCGAAGACAATCCGATGCTGTTATTA    294
                     ||||||||||.|||||.||.|||||.|||||||||||||||||..|..|.
RBAM_035060__    251 GAGAAACGGATGTCTACTACATGGGAGAAGACAATCCGATGCTCCTTCTC    300

BSNT_05787___    295 ATCCCCAAAGGGGTGGCTCACGGATATAGAGTGCTGGGAGAGACGCCGCT    344
                     ||.||||||||.||.||.|||||.||.|||||||||||.||.||.|||||
RBAM_035060__    301 ATTCCCAAAGGCGTCGCACACGGGTACAGAGTGCTGGGCGAAACCCCGCT    350

BSNT_05787___    345 GACAATTATCTATTTTACCACCATGTCGTATAACCCGGATCAGCCTGATG    394
                     |||.|||||.|||||.||.||.|||||.||.||.||||||||||||||.|
RBAM_035060__    351 GACCATTATTTATTTCACGACAATGTCCTACAATCCGGATCAGCCTGACG    400

BSNT_05787___    395 AAAAAAGAATTCCGTGGAATGATGAGACGATCGGTTTTAACTGGAACACT    444
                     ||||||||||.||||||||||||||.||.|||||.|||.|||||.|.||.
RBAM_035060__    401 AAAAAAGAATCCCGTGGAATGATGACACCATCGGATTTGACTGGCAGACG    450

BSNT_05787___    445 GAATTCA--GATAA    456
                     |  .|||  ||||.
RBAM_035060__    451 G--CTCACCGATAG    462


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