Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00456 and RBAM_035050

See DNA alignment / Visit BSNT_00456 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:12
# Commandline: needle
#    -asequence pep-align/BSNT_00456___ycbN.1.9828.seq
#    -bsequence pep-align/RBAM_035050.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00456___ycbN-RBAM_035050.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00456___ycbN-RBAM_035050.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00456___ycbN
# 2: RBAM_035050
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 314
# Identity:     192/314 (61.1%)
# Similarity:   259/314 (82.5%)
# Gaps:           7/314 ( 2.2%)
# Score: 1057.0
# 
#
#=======================================

BSNT_00456___      1 ------MTYIVQTNGLTKTYQGKEVVSNVSMHIKKGEIYGFLGPNGAGKT     44
                           ||||::|:.||||::||||||.|:||:|||||||||||||||||
RBAM_035050        1 MERGKRMTYILKTSQLTKTFKGKEVVSGVNMHVKKGEIYGFLGPNGAGKT     50

BSNT_00456___     45 TIMKMLTSLVKPTSGEIIILGNKFTHTSYEVLGNIGSMIEYPIFYENLTA     94
                     |||||:|:|:|||||||.|.|.|.|.||:|||..:|::|||||||:||||
RBAM_035050       51 TIMKMITNLIKPTSGEIEIFGEKLTDTSFEVLKRMGTIIEYPIFYDNLTA    100

BSNT_00456___     95 EENLDLHCEYMGYHNKKAIQEVLDMVNLKQIDKKPVKTFSLGMKQRLGIA    144
                     :||||.|||||||::||:|...:::|.|..||.|.||.||||||||||||
RBAM_035050      101 KENLDFHCEYMGYYDKKSIDHAIELVKLHNIDNKKVKEFSLGMKQRLGIA    150

BSNT_00456___    145 RAILTKPDLLILDEPVNGLDPLGIKKIRQLFQVLSKEYGMTLLISSHLLG    194
                     |||.|:|:|||||||:|||||:|||::|.||::|.:|||:|||:|||:|.
RBAM_035050      151 RAISTRPELLILDEPINGLDPIGIKELRDLFKLLCREYGITLLVSSHILA    200

BSNT_00456___    195 EIEQIADTIGVIRDGRLLEEVSMEDVRGQNTEYIELVTSNQTRACFVLEK    244
                     |:||::||:|:|::|:|::||||:.:.|:.|||||:...|..:|.::||:
RBAM_035050      201 EMEQMSDTVGIIQNGKLIKEVSMKSINGKQTEYIEVKVQNIKKALYILEQ    250

BSNT_00456___    245 ELQLTNFKILNEKTIRIYEAEASQAAISKALILNDVDIESMNKKYTTLED    294
                     .|.:.|||:::::.|||||...:|..|||||||||:.|||:|||:::||:
RBAM_035050      251 NLGIRNFKMIDQQLIRIYETAVTQQEISKALILNDIGIESINKKHSSLEE    300

BSNT_00456___    295 YFIKLINGNSISA-    307
                     ||:..:||..|.. 
RBAM_035050      301 YFLNSMNGEGIHIR    314


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