Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00456 and RBAM_035050

See Amino acid alignment / Visit BSNT_00456 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:12
# Commandline: needle
#    -asequence dna-align/BSNT_00456___ycbN.1.9828.seq
#    -bsequence dna-align/RBAM_035050.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00456___ycbN-RBAM_035050.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00456___ycbN-RBAM_035050.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00456___ycbN
# 2: RBAM_035050
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 980
# Identity:     599/980 (61.1%)
# Similarity:   599/980 (61.1%)
# Gaps:          91/980 ( 9.3%)
# Score: 1593.0
# 
#
#=======================================

BSNT_00456___      1 ------------------TTGACTTATATCGTACAAACAAACGGGCTGAC     32
                                       .||||.||.|||.||.||||.|....|||.||
RBAM_035050        1 ATGGAAAGGGGAAAGCGAATGACATACATCTTAAAAACGAGTCAGCTTAC     50

BSNT_00456___     33 CAAAACGTATCAGGGCAAAGAGGTCGTATCCAATGTCAGCATGCATATTA     82
                     .|||||.|.|.|.||.|||||.||.||.|||...||.|..|||||..|.|
RBAM_035050       51 AAAAACATTTAAAGGAAAAGAAGTTGTTTCCGGGGTTAATATGCACGTGA    100

BSNT_00456___     83 AAAAAGGTGAAATCTACGGCTTTCTCGGCCCGAACGGCGCGGGGAAAACA    132
                     |||||||.||.||.||.||.||..|.||.||.||.||.||.||.||||||
RBAM_035050      101 AAAAAGGGGAGATTTATGGATTCTTGGGTCCCAATGGTGCAGGTAAAACA    150

BSNT_00456___    133 ACCATCATGAAAATGCTGACGAGCCTTGTCAAACCGACAAGCGGTGAAAT    182
                     |||||.|||||||||.|.||.|...|..||||.||.|||||.||.|||||
RBAM_035050      151 ACCATTATGAAAATGATTACAAATTTAATCAAGCCAACAAGTGGGGAAAT    200

BSNT_00456___    183 CATCATCCTTGGGAACAAGTTCACCCACACGTCATATGAGGTGCTGGGGA    232
                     ....||..|.||..|.||.||.||..|.|||||||.|||.||..|    |
RBAM_035050      201 AGAAATTTTCGGTGAGAAATTAACAGATACGTCATTTGAAGTTTT----A    246

BSNT_00456___    233 A----CATCGGCAGCATGATTGAATATCCGATTTTTTATGAAAACCTGAC    278
                     |    .||.||||.|||.||||||||.||.|||||||||||.|||||.||
RBAM_035050      247 AAAAGAATGGGCACCATTATTGAATACCCCATTTTTTATGACAACCTCAC    296

BSNT_00456___    279 AGCTGAAGAAAATTTAGATCTGCATTGTGAATATATGGGATACCACAATA    328
                     .|||.||||.|||||||||.|.|||||||||||||||||.||..||.|||
RBAM_035050      297 TGCTAAAGAGAATTTAGATTTCCATTGTGAATATATGGGCTATTACGATA    346

BSNT_00456___    329 AAAAAGCCAT--ACAAGAAGTGC--TGGATATGGTGAATTTAAAACAAAT    374
                     |||||.||||  ||.|    .||  |.||..|.||.||.|||.|..|.||
RBAM_035050      347 AAAAATCCATTGACCA----CGCCATCGAGCTTGTAAAGTTACATAATAT    392

BSNT_00456___    375 CGATAAAAAACCCGTCAAAACCTTTTCCCTCGGGATGAAGCAGCGCCTTG    424
                     .|||||.|||...||.|||...|||||..|.||.|||||.||..|..|.|
RBAM_035050      393 TGATAATAAAAAAGTGAAAGAGTTTTCTTTAGGAATGAAACAAAGGTTAG    442

BSNT_00456___    425 GAATTGCGCGTGCCA--TCCTCACGAAGCCGGACCTGCTTATTCTGGATG    472
                     ||||.||..|.||.|  ||..||.||  ||.||.||.||.|||.|.||.|
RBAM_035050      443 GAATAGCCAGAGCTATTTCTACAAGA--CCAGAACTTCTCATTTTAGACG    490

BSNT_00456___    473 AGCCGGTGAATGGTCTTGACCCTCTCGGCATTAAAAAGATCAGGCAATTG    522
                     |||||.|.|||||.||.||.||..|.||.||.|||.||.|.|||.|..|.
RBAM_035050      491 AGCCGATTAATGGCCTGGATCCAATAGGTATAAAAGAGTTGAGGGATCTC    540

BSNT_00456___    523 TTTCAAGTGCTGAGCAAAGAGTACGGTATGACGCTGCTGATCTCAAGCCA    572
                     |||.||.|.||..|||.|||.||.||.||.||..|..|..||||.||.||
RBAM_035050      541 TTTAAATTACTTTGCAGAGAATATGGAATTACATTATTAGTCTCCAGTCA    590

BSNT_00456___    573 CCTGCTGGGTGAAATCGAACAAATCGCGGACACAATCGGCGTCATTCGGG    622
                     |.|..|.|..|||||.||||||||..|.||.||..|.||..||||.|.|.
RBAM_035050      591 CATTTTAGCCGAAATGGAACAAATGTCAGATACTGTTGGTATCATACAGA    640

BSNT_00456___    623 ACGGCAGGCTGCTTGAAGAGGTATCAATGGAGGATGTCAGGGGCCAGAAC    672
                     |.||||.|.|..|..||||.||.||.|||.||..|.|.|..||  |.|||
RBAM_035050      641 ATGGCAAGTTAATAAAAGAAGTTTCTATGAAGAGTATAAACGG--AAAAC    688

BSNT_00456___    673 --ACTGAATACATCGAGCTTGTTACA-TCGA----ATCAGACAAGGGCCT    715
                       ||.||.||.||.|||   ||.|.| ||.|    ||.|.|.||  ||.|
RBAM_035050      689 AAACAGAGTATATAGAG---GTAAAAGTCCAAAATATAAAAAAA--GCGT    733

BSNT_00456___    716 GCTTTGTGCTGGAGAAAGAGCTGCAATTAACCAACTTTAAAAT-ATTAAA    764
                     ..|.|.|..|.|||.||.|.|||....|||..||.|||||||| ||| .|
RBAM_035050      734 TATATATTTTAGAGCAAAATCTGGGGATAAGAAATTTTAAAATGATT-GA    782

BSNT_00456___    765 TGAGAAAACGATTCGAATTTACGAGGCTGAAGCCTCTCAGGCTGCCATAT    814
                     |.||.||...|||||.||.||.||..|.|.||...|.||....|..||.|
RBAM_035050      783 TCAGCAATTAATTCGTATCTATGAAACAGCAGTTACACAACAAGAAATCT    832

BSNT_00456___    815 CCAAAGCATTGATTTTAAATGATGTAGACATTGAATCAATGAACAAAAAG    864
                     |.||||||.|.|||.|.|||||..|.|..||.|||...||.||.||||| 
RBAM_035050      833 CTAAAGCACTTATTCTGAATGACATTGGTATAGAAAGTATAAATAAAAA-    881

BSNT_00456___    865 TATACGACGC-------TGGAGGATTATTTTATCAAATT-GATCAACGG-    905
                           ||.|       |.||.||.|| .||.|.||||| .||.||.|| 
RBAM_035050      882 ------ACACAGTTCTTTAGAAGAATA-CTTCTTAAATTCTATGAATGGG    924

BSNT_00456___    906 -----------CAATAGCATCAGTGCGTAA    924
                                ||.||| || ||       
RBAM_035050      925 GAGGGAATACACATTAG-AT-AG-------    945


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00456 and RBAM_035050

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
