Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00874 and RBAM_034550

See DNA alignment / Visit BSNT_00874 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:36
# Commandline: needle
#    -asequence pep-align/BSNT_00874.1.9828.seq
#    -bsequence pep-align/RBAM_034550.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00874-RBAM_034550.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00874-RBAM_034550.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00874
# 2: RBAM_034550
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 85
# Identity:      27/85 (31.8%)
# Similarity:    40/85 (47.1%)
# Gaps:          19/85 (22.4%)
# Score: 123.0
# 
#
#=======================================

BSNT_00874         1 MVQEVMVMKKDFGDSISNKVYEYRVLARLSQQELAKKVGVSKQTIFVMEK     50
                                    :.|.:.:.|..|.:||.:|||...|::|||..:|.
RBAM_034550        1 ---------------MDNNIKKLRTAADISQNDLAKLCNVTRQTINAIEN     35

BSNT_00874        51 GNYVPTLLLAFRIAEFFNVDVNEIFTYEKGNDQK-     84
                     ..|.|||.|||.||...|..::::|.|   |.:| 
RBAM_034550       36 NKYDPTLSLAFSIAHALNTGIDKVFNY---NAKKK     67


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