Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00874 and RBAM_034550

See Amino acid alignment / Visit BSNT_00874 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:36
# Commandline: needle
#    -asequence dna-align/BSNT_00874.1.9828.seq
#    -bsequence dna-align/RBAM_034550.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00874-RBAM_034550.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00874-RBAM_034550.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00874
# 2: RBAM_034550
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 299
# Identity:     125/299 (41.8%)
# Similarity:   125/299 (41.8%)
# Gaps:         139/299 (46.5%)
# Score: 236.5
# 
#
#=======================================

BSNT_00874         1 TTGGTTCAAGAGGTGATGGTCATGAAGAAAGATTTTGGTGATTCGATCTC     50
                                                          |||    |||..|
RBAM_034550        1 -------------------------------------GTG----GATAAC      9

BSNT_00874        51 AAATAAGGTTTATGAATATCGTGTACTTGCCAGATTGTCTCAGCA----A     96
                     ||        |||.||.|     .||||   |||     .|||||    |
RBAM_034550       10 AA--------TATTAAAA-----AACTT---AGA-----ACAGCAGCTGA     38

BSNT_00874        97 GAATTAGCAAA--GAAAGTCGGG--------------GTTTCCAAACAAA    130
                     .|.||..||||  ||   ||.||              ||..|||..||||
RBAM_034550       39 TATTTCACAAAATGA---TCTGGCTAAGCTCTGCAATGTGACCAGGCAAA     85

BSNT_00874       131 CCATCTTTGTAATGGAGAAAGGA-AATTATGTTCCGACTCT-------GC    172
                     |||||..||.|||.|| |||..| ||.||||..||||||.|       ||
RBAM_034550       86 CCATCAATGCAATTGA-AAATAATAAATATGACCCGACTTTAAGTCTGGC    134

BSNT_00874       173 TGTTAGCTTTTCGAATTGC---CGAATTTTTTAATGTGGATGTAAACGAG    219
                     |      |||||| ||.||   ||.|    ||||         |.|||.|
RBAM_034550      135 T------TTTTCG-ATAGCTCACGCA----TTAA---------ATACGGG    164

BSNT_00874       220 ATTTTTACTTAT-GAGAAAGGA---AATGAT-----CAAAAATGA----    255
                     |         || ||.||||.|   ||..||     ||||||..|    
RBAM_034550      165 A---------ATAGATAAAGTATTCAACTATAACGCCAAAAAAAAGTAA    204


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