Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05656 and RBAM_034210

See DNA alignment / Visit BSNT_05656 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:09
# Commandline: needle
#    -asequence pep-align/BSNT_05656___ywkA.1.9828.seq
#    -bsequence pep-align/RBAM_034210___ywkA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05656___ywkA-RBAM_034210___ywkA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05656___ywkA-RBAM_034210___ywkA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05656___ywkA
# 2: RBAM_034210___ywkA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 565
# Identity:     506/565 (89.6%)
# Similarity:   542/565 (95.9%)
# Gaps:           0/565 ( 0.0%)
# Score: 2632.0
# 
#
#=======================================

BSNT_05656___      1 MNNIKKTKEGHLETTLRGKEVLSIPTLNKGVAFSIEERQELGLEGLLPPT     50
                     |||||.||||:|||||||||||||||||||||||.|||:.|||:||||||
RBAM_034210__      1 MNNIKVTKEGNLETTLRGKEVLSIPTLNKGVAFSAEERKSLGLDGLLPPT     50

BSNT_05656___     51 VLSLDQQAQRAYEQFQAQPDRLRQNVYLSDLANRNEVLFYKLLKNHLREM    100
                     :||||:||:|||||||||||||||||||:||.|||||||:|||:||||||
RBAM_034210__     51 ILSLDEQAKRAYEQFQAQPDRLRQNVYLNDLQNRNEVLFFKLLQNHLREM    100

BSNT_05656___    101 LPVVYTPTVGEAIQEYSHEYRRPQGIYLSIDNIDGIEKAFENLHATAGDI    150
                     ||||||||||||||||||||||||||||||||::|||:||||||||||||
RBAM_034210__    101 LPVVYTPTVGEAIQEYSHEYRRPQGIYLSIDNVEGIEEAFENLHATAGDI    150

BSNT_05656___    151 DLIVATDSESILGIGDWGVGGINIAIGKLAVYTAAAGIDPSRVIPVVLDV    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_034210__    151 DLIVATDSESILGIGDWGVGGINIAIGKLAVYTAAAGIDPSRVIPVVLDV    200

BSNT_05656___    201 GTNNEKLLNDPLYIGNKHERVQGERYEAFIDAYVKAALKFFPKALLHWED    250
                     ||||||||||||||||:|||:||||||||:|||||||||:||||||||||
RBAM_034210__    201 GTNNEKLLNDPLYIGNRHERIQGERYEAFVDAYVKAALKYFPKALLHWED    250

BSNT_05656___    251 LGNKNARNIMKKYNHEILTFNDDIQGTGAITLAGVLAAMKKTGASIKDQR    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_034210__    251 LGNKNARNIMKKYNHEILTFNDDIQGTGAITLAGVLAAMKKTGASIKDQR    300

BSNT_05656___    301 VVIFGAGSAGIGIADQIRDTMVLAGLSEEEANKRFYTLDYRGLLTEDIEG    350
                     ||:||||||||||||||||||||||||||||||.|||:||||||.|.:|.
RBAM_034210__    301 VVVFGAGSAGIGIADQIRDTMVLAGLSEEEANKAFYTMDYRGLLIEGMEN    350

BSNT_05656___    351 ILDFQRPYLRNADEVKDWKRDEKGQIPFDEVVRQAKPTILIGTSGVSGAF    400
                     |||||.||||.|:|:|||||||.|||||.||:|||||||||||||.||||
RBAM_034210__    351 ILDFQEPYLRTAEEIKDWKRDENGQIPFIEVIRQAKPTILIGTSGQSGAF    400

BSNT_05656___    401 TEEIVKEMASHVDRPVIMPMSNPTHLAEAVPEDLFKWTDGKVLIATGSPF    450
                     :||||||||.||:|||||||||||.||||||.|||||||||||:||||||
RBAM_034210__    401 SEEIVKEMAKHVERPVIMPMSNPTPLAEAVPSDLFKWTDGKVLVATGSPF    450

BSNT_05656___    451 DNVEYNGVSYEIGQSNNAFAFPGLGLGSIVAEARIITPAMFAATADAIAE    500
                     |||||||||:||||||||||||||||||||.||::|||||||||||||||
RBAM_034210__    451 DNVEYNGVSHEIGQSNNAFAFPGLGLGSIVVEAKVITPAMFAATADAIAE    500

BSNT_05656___    501 MVDFETPGAGLLPSIDKLQEVSIQVAIAVAEAAIKDGVANRQPEDVKQAV    550
                     .|||||||||||||:..||||||:|||||||.|||:|||||.||:|:|||
RBAM_034210__    501 SVDFETPGAGLLPSMSDLQEVSIKVAIAVAETAIKEGVANRIPENVEQAV    550

BSNT_05656___    551 LDAMWTPEYKKVIAK    565
                     |||||.|:||:|:||
RBAM_034210__    551 LDAMWKPQYKQVVAK    565


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