Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05656 and RBAM_034210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_05656___ywkA.1.9828.seq
# -bsequence dna-align/RBAM_034210___ywkA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05656___ywkA-RBAM_034210___ywkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05656___ywkA-RBAM_034210___ywkA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05656___ywkA
# 2: RBAM_034210___ywkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1712
# Identity: 1417/1712 (82.8%)
# Similarity: 1417/1712 (82.8%)
# Gaps: 28/1712 ( 1.6%)
# Score: 5870.0
#
#
#=======================================
BSNT_05656___ 1 TTGAATAACATAAAAAAAACGAAAGAAGGCCACTTAGAAACAACTCTTAG 50
||||||||.||.|||..||||||.||||||.||||||||||.|||.|.||
RBAM_034210__ 1 TTGAATAATATTAAAGTAACGAAGGAAGGCAACTTAGAAACTACTTTAAG 50
BSNT_05656___ 51 AGGAAAAGAAGTTTTATCTATTCCTACTTTAAATAAAGGCGTTGCTTTTT 100
|||||||||||||.|||||||.|||||||||||||||||.|||||.||||
RBAM_034210__ 51 AGGAAAAGAAGTTCTATCTATCCCTACTTTAAATAAAGGTGTTGCGTTTT 100
BSNT_05656___ 101 CAATAGAAGAAAGACAAGAACTCGGCTTAGAAGGGCTTCTGCCGCCAACT 150
||..||||||||||.||...||.||.|||||.|||||.||.||.||.||.
RBAM_034210__ 101 CAGCAGAAGAAAGAAAAAGCCTTGGATTAGACGGGCTGCTTCCTCCGACA 150
BSNT_05656___ 151 GTACTTTCTCTTGATCAACAAGCACAACGCGCGTACGAGCAATTCCAAGC 200
.|.||.|||||||||.|.||.|||.|||||||.||||||||.||.|||||
RBAM_034210__ 151 ATTCTGTCTCTTGATGAGCAGGCAAAACGCGCATACGAGCAGTTTCAAGC 200
BSNT_05656___ 201 GCAGCCTGACCGCCTTCGTCAAAATGTTTACTTAAGTGATCTTGC-AAAC 249
.|||||.|||||||||||.|||||.||.||.||.|.|||| |||| ||||
RBAM_034210__ 201 TCAGCCGGACCGCCTTCGCCAAAACGTGTATTTGAATGAT-TTGCAAAAC 249
BSNT_05656___ 250 CGTAACGAAGTTCTTTTCTATAAATTGCTGAAAAACCATCTTCGCGAAAT 299
|||||||||||||||||||.|||||||||..|||||||||||||.|||||
RBAM_034210__ 250 CGTAACGAAGTTCTTTTCTTTAAATTGCTTCAAAACCATCTTCGTGAAAT 299
BSNT_05656___ 300 GCTTCCTGTTGTGTACACGCCAACAGTTGGTGAAGCGATTCAGGAATACA 349
|||.||.|||||.|||||.||.||.||.||||||||||||||.|||||||
RBAM_034210__ 300 GCTGCCGGTTGTTTACACACCGACTGTCGGTGAAGCGATTCAAGAATACA 349
BSNT_05656___ 350 GCCATGAATATAGAAGACCTCAAGGAATCTACTTGTCAATCGACAACATT 399
|||||||.||.||||||||||||||.||.|||.|.||.||.||||||.|.
RBAM_034210__ 350 GCCATGAGTACAGAAGACCTCAAGGGATTTACCTTTCTATTGACAACGTG 399
BSNT_05656___ 400 GACGGTATTGAAAAAGCGTTTGAAAACCTTCACGCGACAGCAGGCGATAT 449
||.||.||||||.|.||.||||||||||||||.||.||.||.||.|||||
RBAM_034210__ 400 GAAGGGATTGAAGAGGCATTTGAAAACCTTCATGCCACTGCCGGAGATAT 449
BSNT_05656___ 450 TGATCTTATCGTTGCTACTGACTCCGAAAGCATTCTCGGTATCGGTGACT 499
||||||.||||||||.||.|||||.||||||||.|||||.||||||||||
RBAM_034210__ 450 TGATCTGATCGTTGCGACAGACTCAGAAAGCATCCTCGGAATCGGTGACT 499
BSNT_05656___ 500 GGGGTGTAGGCGGTATTAATATCGCAATCGGTAAATTGGCTGTTTACACT 549
||||||||||||||||.||.|||||.|||||||||||.||.||.|||||.
RBAM_034210__ 500 GGGGTGTAGGCGGTATCAACATCGCCATCGGTAAATTAGCGGTATACACA 549
BSNT_05656___ 550 GCTGCAGCTGGTATTGACCCTAGCCGTGTTATCCCGGTTGTGCTTGATGT 599
|||||.||.|||||||||||.|||||||||||.||.||.||.|||||.||
RBAM_034210__ 550 GCTGCTGCCGGTATTGACCCAAGCCGTGTTATTCCTGTCGTTCTTGACGT 599
BSNT_05656___ 600 CGGTACGAACAACGAAAAACTTCTAAACGATCCTTTATATATTGGTAACA 649
||||||||||||.|||||||||||.||||||||||||||.||.||||||.
RBAM_034210__ 600 CGGTACGAACAATGAAAAACTTCTGAACGATCCTTTATACATCGGTAACC 649
BSNT_05656___ 650 AGCATGAACGTGTTCAAGGTGAACGCTACGAAGCTTTCATTGACGCTTAT 699
..|||||||||.|.|||||.|||||.||||||||||||.|||||||||||
RBAM_034210__ 650 GCCATGAACGTATCCAAGGCGAACGTTACGAAGCTTTCGTTGACGCTTAT 699
BSNT_05656___ 700 GTAAAAGCTGCATTGAAATTCTTCCCTAAAGCGCTTCTTCACTGGGAAGA 749
|||||||||||..|.||||..|||||||||||.|||||||||||||||||
RBAM_034210__ 700 GTAAAAGCTGCGCTTAAATATTTCCCTAAAGCTCTTCTTCACTGGGAAGA 749
BSNT_05656___ 750 CCTTGGCAACAAAAATGCACGCAACATCATGAAAAAATACAATCATGAAA 799
||||||.||||||||.||.|||||.||||||||.||||||||||||||||
RBAM_034210__ 750 CCTTGGAAACAAAAACGCGCGCAATATCATGAAGAAATACAATCATGAAA 799
BSNT_05656___ 800 TCCTGACATTTAATGATGATATTCAAGGTACTGGCGCGATTACACTTGCT 849
|.||.|||||.||.|||||.||||||||.||.||.||||||||.|||||.
RBAM_034210__ 800 TTCTTACATTCAACGATGACATTCAAGGAACAGGTGCGATTACGCTTGCA 849
BSNT_05656___ 850 GGTGTGCTTGCCGCTATGAAGAAAACAGGCGCTTCTATTAAAGATCAGCG 899
|||||||||||.||||||||||||||||||||.|||||||||||.|||||
RBAM_034210__ 850 GGTGTGCTTGCGGCTATGAAGAAAACAGGCGCGTCTATTAAAGACCAGCG 899
BSNT_05656___ 900 TGTTGTTATCTTCGGTGCCGGTTCTGCTGGTATCGGTATTGCTGACCAAA 949
|||.|||.||||||||||.||.|||||.||.|||||.||.||||||||||
RBAM_034210__ 900 TGTGGTTGTCTTCGGTGCTGGATCTGCCGGAATCGGAATCGCTGACCAAA 949
BSNT_05656___ 950 TCCGTGACACAATGGTGCTAGCCGGATTATCTGAAGAAGAAGCTAACAAA 999
||||.|||||.||||||||.|||||..|.||||||||||||||.||||||
RBAM_034210__ 950 TCCGCGACACTATGGTGCTTGCCGGTCTTTCTGAAGAAGAAGCCAACAAA 999
BSNT_05656___ 1000 -CGTTTCTACACACTTGATTACAGAGGCTTGCTGACTGAAGACATCGAAG 1048
|| |||||||||.|.||.||||||||||||.|.|.|||||..||.|||.
RBAM_034210__ 1000 GCG-TTCTACACAATGGACTACAGAGGCTTGTTAATTGAAGGTATGGAAA 1048
BSNT_05656___ 1049 GCATCCTTGATTTCCAAAGA-CCTTACCTTCGCAATGCGGATGAAGTGAA 1097
.|||.|||||||||| |||| ||.|||||.||||..||.||.|||.|.||
RBAM_034210__ 1049 ACATTCTTGATTTCC-AAGAGCCGTACCTGCGCACAGCTGAAGAAATTAA 1097
BSNT_05656___ 1098 AGACTGGAAGCGTGATGAAAAAGGTCAAATTCCATTCGATGAAGTTGTTC 1147
|||.|||||.||.||||||||.||.||||||||.|||..||||||..|.|
RBAM_034210__ 1098 AGATTGGAAACGCGATGAAAATGGACAAATTCCTTTCATTGAAGTGATCC 1147
BSNT_05656___ 1148 GTCAAGCGAAACCAACAATCTTGATTGGTACTTCAGGGGTTTCA----GG 1193
|||||||||||||.||||||||.||.|||||.||||| .|| ||
RBAM_034210__ 1148 GTCAAGCGAAACCGACAATCTTAATCGGTACATCAGG----CCAAAGCGG 1193
BSNT_05656___ 1194 TGCATTCACAGAGGAAATTGTAAAAGAAATGGCATCTCACGTAGACCGTC 1243
.||.||||..||.|||||.||.||||||||||||...|||||.||.||||
RBAM_034210__ 1194 CGCGTTCAGTGAAGAAATCGTCAAAGAAATGGCAAAACACGTTGAGCGTC 1243
BSNT_05656___ 1244 CGGTTATCATGCCGATGTCTAACCCGACTCACCTTGCTGAAGCTGTTCCT 1293
||||.|||||||||||||||||||||||.|..|||||||||||.||||||
RBAM_034210__ 1244 CGGTCATCATGCCGATGTCTAACCCGACACCGCTTGCTGAAGCCGTTCCT 1293
BSNT_05656___ 1294 GAAGATCTGTTCAAATGGACTGACGGAAAAGTGCTTATTGCAACAGGAAG 1343
...|||||.|||||||||||||||||.|||||||||.|.||.||||||||
RBAM_034210__ 1294 AGCGATCTTTTCAAATGGACTGACGGCAAAGTGCTTGTGGCGACAGGAAG 1343
BSNT_05656___ 1344 CCCATTTGACAATGTAGAATACAACGGTGTTTCTTATGAAATCGGACAAT 1393
|||.||||||||||||||.|||||.||.||||||.|||||||||||||||
RBAM_034210__ 1344 CCCGTTTGACAATGTAGAGTACAATGGCGTTTCTCATGAAATCGGACAAT 1393
BSNT_05656___ 1394 CTAACAACGCATTCGCGTTCCCTGGTCTTGGACTTGGTTCAATTGTAGCT 1443
|||||||||||||||||||||||||.|||||.||.||||||||.||.|..
RBAM_034210__ 1394 CTAACAACGCATTCGCGTTCCCTGGACTTGGTCTCGGTTCAATCGTTGTA 1443
BSNT_05656___ 1444 GAAGCG--CGTATCATTACACCTGCTATGTTTGCTGCAACTGCTGATGCG 1491
|||||| .||| |||||.|||||.||||||||.|||||||||||.||.
RBAM_034210__ 1444 GAAGCGAAAGTA--ATTACTCCTGCAATGTTTGCGGCAACTGCTGACGCA 1491
BSNT_05656___ 1492 ATTGCTGAAATGGTTGATTTTGAAACACCTGGAGCAGGATTGCTTCCAAG 1541
||.||.||||..|||||||||||||||||.||.|||||..|.||.||.||
RBAM_034210__ 1492 ATCGCAGAAAGCGTTGATTTTGAAACACCGGGTGCAGGCCTTCTGCCGAG 1541
BSNT_05656___ 1542 CATTGATAAGC----TTCAAGAGGTTTCTATCCAAGTTGCGATTGCCGTT 1587
| ||.||| |.|||||.|||||.||..||||||||||.|||||.
RBAM_034210__ 1542 C----ATGAGCGACTTACAAGAAGTTTCAATTAAAGTTGCGATCGCCGTA 1587
BSNT_05656___ 1588 GCTGAAGCAGCAATTAAAGACGGCGTGGCAAATCGTCA-GCCTGAAGATG 1636
||.|||.|.||.||||||||.|||||||||||.|| || .||||||.|||
RBAM_034210__ 1588 GCGGAAACTGCCATTAAAGAAGGCGTGGCAAACCG-CATTCCTGAAAATG 1636
BSNT_05656___ 1637 TGAAACAAGCGGTACTTGATGCAATGTGGACACCTGAATACAAAAAAGTC 1686
|..|||||||.||.||||||||||||||||.|||..||||.|||.||||.
RBAM_034210__ 1637 TAGAACAAGCCGTTCTTGATGCAATGTGGAAACCGCAATATAAACAAGTT 1686
BSNT_05656___ 1687 ATCGCGAAATAA 1698
.||||.||||||
RBAM_034210__ 1687 GTCGCTAAATAA 1698
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