Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05608 and RBAM_033890

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:06
# Commandline: needle
#    -asequence pep-align/BSNT_05608___ywmD.1.9828.seq
#    -bsequence pep-align/RBAM_033890___ywmD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05608___ywmD-RBAM_033890___ywmD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05608___ywmD-RBAM_033890___ywmD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05608___ywmD
# 2: RBAM_033890___ywmD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 226
# Identity:     158/226 (69.9%)
# Similarity:   193/226 (85.4%)
# Gaps:           2/226 ( 0.9%)
# Score: 826.0
# 
#
#=======================================

BSNT_05608___      1 MKKLLAAGIIGLLTVSIASPSFAAEKQ-ADSNVAVLFDGSGSMVQKTGGE     49
                     |||:..|||:||||:|:.||.|||||: .::|||||||.||||:||||||
RBAM_033890__      1 MKKMFTAGIVGLLTLSLGSPVFAAEKKHEETNVAVLFDASGSMIQKTGGE     50

BSNT_05608___     50 RKIDIAKKSVKSFAELLPKDTNLMLRVFGHAGNNKLSGKALSCSTTETIY     99
                     ||||:||:||.||||:||:|||||||||||.||||.||||:||:.|||:|
RBAM_033890__     51 RKIDVAKESVTSFAEVLPEDTNLMLRVFGHKGNNKNSGKAVSCNATETLY    100

BSNT_05608___    100 GLHPYEGSLFDNSLSELKPTGWTPIAKALADTRKEFEAFDADGKNVVYLI    149
                     ||.||..:.|:.|||::||||||||||||:|||:|||...|.||||||||
RBAM_033890__    101 GLQPYAVTPFEQSLSKIKPTGWTPIAKALSDTREEFERAGATGKNVVYLI    150

BSNT_05608___    150 TDGEETCGGDPAAEIEKLRASNVDTIVNIIGFNFDVKGNEEMKQAAVAGC    199
                     |||||||||:|.|||:|||.:||:||||||||||.:||:|.:::||.||.
RBAM_033890__    151 TDGEETCGGNPQAEIQKLRKANVNTIVNIIGFNFGMKGSESLEKAAEAGG    200

BSNT_05608___    200 GEYISANSADEFEQAWEKEAQKFTE-    224
                     |.|:||:|||||:||||..|:...: 
RBAM_033890__    201 GTYVSADSADEFKQAWEDAAKDLAKE    226


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