Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05608 and RBAM_033890

See Amino acid alignment / Visit BSNT_05608 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:06
# Commandline: needle
#    -asequence dna-align/BSNT_05608___ywmD.1.9828.seq
#    -bsequence dna-align/RBAM_033890___ywmD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05608___ywmD-RBAM_033890___ywmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05608___ywmD-RBAM_033890___ywmD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05608___ywmD
# 2: RBAM_033890___ywmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 708
# Identity:     493/708 (69.6%)
# Similarity:   493/708 (69.6%)
# Gaps:          60/708 ( 8.5%)
# Score: 1657.5
# 
#
#=======================================

BSNT_05608___      1 ATGAAAAAATTGCTGGCTGCCGGTATCATTGGATTGTTGACTGTTTCCAT     50
                     |||||||||.||.|..||||.||.||..|.|||.|.|||||..||||..|
RBAM_033890__      1 ATGAAAAAAATGTTCACTGCGGGGATTGTCGGACTTTTGACGCTTTCACT     50

BSNT_05608___     51 TGCCTC-CCCGTCTTTTGCCGCTGAGAAA---CAGGCTGATTCAAATGTA     96
                     .|..|| ||.|| ||||||.|||||||||   ||.|..||..||||.||.
RBAM_033890__     51 CGGATCACCTGT-TTTTGCAGCTGAGAAAAAGCACGAAGAAACAAACGTT     99

BSNT_05608___     97 GCTGTTTTGTTTGACGGAAGCGGAAGCATGGTTCAAAAAACAGGAGGAGA    146
                     ||.||..|||||||||.|||||||||||||.|.|||||||||||.|||||
RBAM_033890__    100 GCCGTGCTGTTTGACGCAAGCGGAAGCATGATACAAAAAACAGGGGGAGA    149

BSNT_05608___    147 GCGCAAAATAGACATTGCCAAAAAATCAGTAAAATCTTTTGCCGAACTCC    196
                     |||.||||||||..|.||.|||.|.||.||.|..||||||||.|||.|.|
RBAM_033890__    150 GCGTAAAATAGATGTCGCGAAAGAGTCTGTCACTTCTTTTGCGGAAGTTC    199

BSNT_05608___    197 TTCC-GAAGGATACAAATCTTATGCTTCGCGTTTTCGGGCATGCAGGG-A    244
                     |||| ||| ||.||.|||||.||||||||.||.||||||||| .|||| |
RBAM_033890__    200 TTCCTGAA-GACACGAATCTGATGCTTCGGGTATTCGGGCAT-AAGGGCA    247

BSNT_05608___    245 ATAATAAACTGTCCGGTAAAGCCCTTTCATGCAGCACAACGGAAACCATT    294
                     ||||||||...||.||.||||||.|.|||||.|...|.||.|||||..|.
RBAM_033890__    248 ATAATAAAAACTCAGGCAAAGCCGTATCATGTAATGCGACAGAAACGTTA    297

BSNT_05608___    295 TACGGCCTTCATCCATATGAAGGGTCTCTGTTTGA-CAATTCATTGAGTG    343
                     |||||||||||.||.||.|..|.|.|||..||||| ||| |||.|.||..
RBAM_033890__    298 TACGGCCTTCAGCCGTACGCCGTGACTCCATTTGAGCAA-TCACTCAGCA    346

BSNT_05608___    344 AGCTCAAGCCGACTGGATGGACACCGATTGCCAAAGCACTTGCAGACACA    393
                     ||.|.||.|||||.||.||||||||||||||.|||||.||..|.||.||.
RBAM_033890__    347 AGATTAAACCGACCGGCTGGACACCGATTGCGAAAGCGCTCTCTGATACG    396

BSNT_05608___    394 AGAAAAGAATTTGAAGCATTTGACGCAGAC----------GGGAAAAACG    433
                     .|..||||||||||          ||.|.|          ||||||||||
RBAM_033890__    397 CGTGAAGAATTTGA----------GCGGGCCGGCGCCACGGGGAAAAACG    436

BSNT_05608___    434 TGGTGTATTTAATCACTGACGGTGAAGAAACGTGCGGCGGAGACCCTGCG    483
                     |.||.|||.|.|||||.||||||||||||||.||||||||..|.|||..|
RBAM_033890__    437 TCGTATATCTGATCACAGACGGTGAAGAAACATGCGGCGGTAATCCTCAG    486

BSNT_05608___    484 GCAGAAATCGAAAAGCTCCGTGCATCAAATGTGGATACGATTGTAAACAT    533
                     ||.|||||..|||||||||||..|.|.||.||..|.|||||.||.||.||
RBAM_033890__    487 GCCGAAATTCAAAAGCTCCGTAAAGCGAACGTCAACACGATCGTCAATAT    536

BSNT_05608___    534 CATTGGCTTCAACTTTG--ATGTCAAGGGTAATGAAGAGA------TGAA    575
                     |||.|||||||||||.|  ||       |.||.||||.||      ||||
RBAM_033890__    537 CATCGGCTTCAACTTCGGCAT-------GAAAGGAAGCGAAAGCCTTGAA    579

BSNT_05608___    576 ACAAGCAGCTGTCGCTGGCTGTGGAGAATATATTTCAGCGAACAGTGCGG    625
                     | ||||.||.|..||.||..|.||...||||.|.|||||..||||.||||
RBAM_033890__    580 A-AAGCGGCGGAAGCGGGAGGCGGCACATATGTCTCAGCTGACAGCGCGG    628

BSNT_05608___    626 ATGAGTTCGAACAGGCTTGGGAAAAAGAAGCACAAAAATTTACTGAGTAA    675
                     |.||||||.||||||||||||||.|.|..||| ||..||||    ||.||
RBAM_033890__    629 ACGAGTTCAAACAGGCTTGGGAAGACGCTGCA-AAGGATTT----AGCAA    673

BSNT_05608___    675 --------    675
                             
RBAM_033890__    674 AAGAATAG    681


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