Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05608 and RBAM_033890
See
Amino acid alignment /
Visit
BSNT_05608 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:06
# Commandline: needle
# -asequence dna-align/BSNT_05608___ywmD.1.9828.seq
# -bsequence dna-align/RBAM_033890___ywmD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05608___ywmD-RBAM_033890___ywmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05608___ywmD-RBAM_033890___ywmD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05608___ywmD
# 2: RBAM_033890___ywmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 708
# Identity: 493/708 (69.6%)
# Similarity: 493/708 (69.6%)
# Gaps: 60/708 ( 8.5%)
# Score: 1657.5
#
#
#=======================================
BSNT_05608___ 1 ATGAAAAAATTGCTGGCTGCCGGTATCATTGGATTGTTGACTGTTTCCAT 50
|||||||||.||.|..||||.||.||..|.|||.|.|||||..||||..|
RBAM_033890__ 1 ATGAAAAAAATGTTCACTGCGGGGATTGTCGGACTTTTGACGCTTTCACT 50
BSNT_05608___ 51 TGCCTC-CCCGTCTTTTGCCGCTGAGAAA---CAGGCTGATTCAAATGTA 96
.|..|| ||.|| ||||||.||||||||| ||.|..||..||||.||.
RBAM_033890__ 51 CGGATCACCTGT-TTTTGCAGCTGAGAAAAAGCACGAAGAAACAAACGTT 99
BSNT_05608___ 97 GCTGTTTTGTTTGACGGAAGCGGAAGCATGGTTCAAAAAACAGGAGGAGA 146
||.||..|||||||||.|||||||||||||.|.|||||||||||.|||||
RBAM_033890__ 100 GCCGTGCTGTTTGACGCAAGCGGAAGCATGATACAAAAAACAGGGGGAGA 149
BSNT_05608___ 147 GCGCAAAATAGACATTGCCAAAAAATCAGTAAAATCTTTTGCCGAACTCC 196
|||.||||||||..|.||.|||.|.||.||.|..||||||||.|||.|.|
RBAM_033890__ 150 GCGTAAAATAGATGTCGCGAAAGAGTCTGTCACTTCTTTTGCGGAAGTTC 199
BSNT_05608___ 197 TTCC-GAAGGATACAAATCTTATGCTTCGCGTTTTCGGGCATGCAGGG-A 244
|||| ||| ||.||.|||||.||||||||.||.||||||||| .|||| |
RBAM_033890__ 200 TTCCTGAA-GACACGAATCTGATGCTTCGGGTATTCGGGCAT-AAGGGCA 247
BSNT_05608___ 245 ATAATAAACTGTCCGGTAAAGCCCTTTCATGCAGCACAACGGAAACCATT 294
||||||||...||.||.||||||.|.|||||.|...|.||.|||||..|.
RBAM_033890__ 248 ATAATAAAAACTCAGGCAAAGCCGTATCATGTAATGCGACAGAAACGTTA 297
BSNT_05608___ 295 TACGGCCTTCATCCATATGAAGGGTCTCTGTTTGA-CAATTCATTGAGTG 343
|||||||||||.||.||.|..|.|.|||..||||| ||| |||.|.||..
RBAM_033890__ 298 TACGGCCTTCAGCCGTACGCCGTGACTCCATTTGAGCAA-TCACTCAGCA 346
BSNT_05608___ 344 AGCTCAAGCCGACTGGATGGACACCGATTGCCAAAGCACTTGCAGACACA 393
||.|.||.|||||.||.||||||||||||||.|||||.||..|.||.||.
RBAM_033890__ 347 AGATTAAACCGACCGGCTGGACACCGATTGCGAAAGCGCTCTCTGATACG 396
BSNT_05608___ 394 AGAAAAGAATTTGAAGCATTTGACGCAGAC----------GGGAAAAACG 433
.|..|||||||||| ||.|.| ||||||||||
RBAM_033890__ 397 CGTGAAGAATTTGA----------GCGGGCCGGCGCCACGGGGAAAAACG 436
BSNT_05608___ 434 TGGTGTATTTAATCACTGACGGTGAAGAAACGTGCGGCGGAGACCCTGCG 483
|.||.|||.|.|||||.||||||||||||||.||||||||..|.|||..|
RBAM_033890__ 437 TCGTATATCTGATCACAGACGGTGAAGAAACATGCGGCGGTAATCCTCAG 486
BSNT_05608___ 484 GCAGAAATCGAAAAGCTCCGTGCATCAAATGTGGATACGATTGTAAACAT 533
||.|||||..|||||||||||..|.|.||.||..|.|||||.||.||.||
RBAM_033890__ 487 GCCGAAATTCAAAAGCTCCGTAAAGCGAACGTCAACACGATCGTCAATAT 536
BSNT_05608___ 534 CATTGGCTTCAACTTTG--ATGTCAAGGGTAATGAAGAGA------TGAA 575
|||.|||||||||||.| || |.||.||||.|| ||||
RBAM_033890__ 537 CATCGGCTTCAACTTCGGCAT-------GAAAGGAAGCGAAAGCCTTGAA 579
BSNT_05608___ 576 ACAAGCAGCTGTCGCTGGCTGTGGAGAATATATTTCAGCGAACAGTGCGG 625
| ||||.||.|..||.||..|.||...||||.|.|||||..||||.||||
RBAM_033890__ 580 A-AAGCGGCGGAAGCGGGAGGCGGCACATATGTCTCAGCTGACAGCGCGG 628
BSNT_05608___ 626 ATGAGTTCGAACAGGCTTGGGAAAAAGAAGCACAAAAATTTACTGAGTAA 675
|.||||||.||||||||||||||.|.|..||| ||..|||| ||.||
RBAM_033890__ 629 ACGAGTTCAAACAGGCTTGGGAAGACGCTGCA-AAGGATTT----AGCAA 673
BSNT_05608___ 675 -------- 675
RBAM_033890__ 674 AAGAATAG 681
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.