Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05604 and RBAM_033880

See DNA alignment / Visit BSNT_05604 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:06
# Commandline: needle
#    -asequence pep-align/BSNT_05604___fdhD.1.9828.seq
#    -bsequence pep-align/RBAM_033880___fdhD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05604___fdhD-RBAM_033880___fdhD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05604___fdhD-RBAM_033880___fdhD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05604___fdhD
# 2: RBAM_033880___fdhD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 262
# Identity:     218/262 (83.2%)
# Similarity:   241/262 (92.0%)
# Gaps:           0/262 ( 0.0%)
# Score: 1143.0
# 
#
#=======================================

BSNT_05604___      1 MNDKVTAVRDVWRYEQGEISKVEDRMVTEFPLTVILNGSEFVTLVCTPEH     50
                     |:.:.|||||::|||:|.::|..||||:|:||||::||.|||||||||:|
RBAM_033880__      1 MDKRTTAVRDIYRYEKGVLTKTADRMVSEYPLTVMVNGQEFVTLVCTPDH     50

BSNT_05604___     51 IEELVIGFLASEGVIRFQKEIKRFTIDESLGFVYVDLVHPETLDQKDYTK    100
                     :||||||||||||||||:||||.|||||||||.||:|.:|..|:||||||
RBAM_033880__     51 LEELVIGFLASEGVIRFEKEIKSFTIDESLGFAYVELTNPGVLEQKDYTK    100

BSNT_05604___    101 RVIGSCCGKGRHFYFQQDVKTAKTAVSQIKISPEACLALMKDMQQGSGTF    150
                     |||||||||||||||||||||||||||:|.|:||.||.|||:||.|||||
RBAM_033880__    101 RVIGSCCGKGRHFYFQQDVKTAKTAVSRITITPETCLRLMKEMQSGSGTF    150

BSNT_05604___    151 QDTGGVHNAALCDTEKLLLMRTDIGRHNALDKLYGHCLLNGMSVRDKLIV    200
                     |:||||||||||||||||.||||||||||||||||.||.|||.|||||||
RBAM_033880__    151 QETGGVHNAALCDTEKLLFMRTDIGRHNALDKLYGCCLKNGMPVRDKLIV    200

BSNT_05604___    201 FSGRISSEVLLKAAKIGVSIVISKSAPTELAIQMAEELNITAIGFVRNGS    250
                     |||||||||||||||||||||||||||||||:||||||||||||||||||
RBAM_033880__    201 FSGRISSEVLLKAAKIGVSIVISKSAPTELALQMAEELNITAIGFVRNGS    250

BSNT_05604___    251 FNVYTHPERIRG    262
                     |||||||||:..
RBAM_033880__    251 FNVYTHPERVEQ    262


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