Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05604 and RBAM_033880

See Amino acid alignment / Visit BSNT_05604 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:06
# Commandline: needle
#    -asequence dna-align/BSNT_05604___fdhD.1.9828.seq
#    -bsequence dna-align/RBAM_033880___fdhD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05604___fdhD-RBAM_033880___fdhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05604___fdhD-RBAM_033880___fdhD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05604___fdhD
# 2: RBAM_033880___fdhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 812
# Identity:     624/812 (76.8%)
# Similarity:   624/812 (76.8%)
# Gaps:          46/812 ( 5.7%)
# Score: 2348.5
# 
#
#=======================================

BSNT_05604___      1 TTGAACGATAA---AGTAACTGCGGTCAGGGATGTATGGCGCTATGAACA     47
                     .||   |||||   |..|||.|||||.|||||..|||..|||||||||.|
RBAM_033880__      1 GTG---GATAAAAGAACAACAGCGGTAAGGGACATATACCGCTATGAAAA     47

BSNT_05604___     48 AGGGGAAATAAGCAAAGTA--GAAGACCGGATGGTGACGGAATTCCCTTT     95
                     |||||.|.||| ||||| |  |..||.||||||||..|.||.|..||..|
RBAM_033880__     48 AGGGGTATTAA-CAAAG-ACGGCGGATCGGATGGTTTCAGAGTATCCGCT     95

BSNT_05604___     96 GACAGTGATACTGAATGG-CAGTGAATTTGTGACGCTCGTTTGTACGCCT    144
                     |||.||.||..||||.|| ||| ||||||||.||||||||.||.||||||
RBAM_033880__     96 GACCGTCATGGTGAACGGACAG-GAATTTGTTACGCTCGTCTGCACGCCT    144

BSNT_05604___    145 GAGCATATCGAAGAGCTTGTCATCGGATTTCTCGCATCAGAGGGTGTTAT    194
                     ||.|||.|.||.||.||.|||||||||||||||||||||||.||.||.||
RBAM_033880__    145 GACCATTTAGAGGAACTCGTCATCGGATTTCTCGCATCAGAAGGCGTCAT    194

BSNT_05604___    195 ACGATTTCAAAAAGAAATTAAAAGGTTTACAATAGATGAAAGTCTCGGTT    244
                     .||.|||.||||||||||.|||||.|||||.|||||||||||||||||.|
RBAM_033880__    195 TCGTTTTGAAAAAGAAATCAAAAGCTTTACTATAGATGAAAGTCTCGGGT    244

BSNT_05604___    245 TTGTATATGTCGACCT--CGTTCA--CCCTGAGACATTGGATCAAAAGGA    290
                     |||.||||||.||.||  ||   |  |||.|||...|| ||.|||||.||
RBAM_033880__    245 TTGCATATGTTGAACTGACG---AATCCCGGAGTGCTT-GAGCAAAAAGA    290

BSNT_05604___    291 TTATACGAAACGGGTGATCGGCTCATGCTGCGGAAAGGGCCGTCATTTTT    340
                     .||||||||..||||.|||||.|||||||||||.||.|||||.|||||||
RBAM_033880__    291 CTATACGAAGAGGGTCATCGGTTCATGCTGCGGGAAAGGCCGCCATTTTT    340

BSNT_05604___    341 ATTTTCAGCAGGATGTCAAAACAGCCAAGACGGCTGTCAGCCAAATCAAG    390
                     |.||||||||||||||.|||||.|||||.||.||.|||||||..||||..
RBAM_033880__    341 ACTTTCAGCAGGATGTGAAAACGGCCAAAACCGCCGTCAGCCGTATCACC    390

BSNT_05604___    391 ATATCGCCTGAGGCATGTCTGGCG-CTTATGAAAGACATGCAGCAA--GG    437
                     |||.|.||||||.|.||.|| .|| ||.|||||.||.|||||  ||  ||
RBAM_033880__    391 ATAACTCCTGAGACGTGCCT-TCGCCTGATGAAGGAGATGCA--AAGCGG    437

BSNT_05604___    438 GAGCGGGACGTTTCAGGATACGGGAGGCGTCCATAATGCGGCGCTTTGCG    487
                     ||||||.||.||.|||||.|||||.||||||||||||||||||||.||||
RBAM_033880__    438 GAGCGGCACCTTCCAGGAAACGGGCGGCGTCCATAATGCGGCGCTGTGCG    487

BSNT_05604___    488 ACACAGAGAAGCTTCTGTTGATGCGCACCGATATCGGTCGGCACAACGCA    537
                     |.||.||.|||||.||.||.|||.|.||.||.|||||.||.||||||||.
RBAM_033880__    488 ATACGGAAAAGCTGCTCTTCATGAGGACGGACATCGGGCGCCACAACGCG    537

BSNT_05604___    538 CTTGATAAACTATACGGACACTGCCTTCT---AAACGGGATGTCCGTACG    584
                     ||.|||||.||.|||||   ||||..|.|   ||||||.|||.|.||.||
RBAM_033880__    538 CTGGATAAGCTGTACGG---CTGCTGTTTGAAAAACGGAATGCCGGTCCG    584

BSNT_05604___    585 CGACAAACTGATTGTGTTCAGCGGCAGAATCTCATCAGAGGTCCTGTTAA    634
                     .|||||.|||||.||.|||||||||.|.||.||.||||||||..|.||||
RBAM_033880__    585 TGACAAGCTGATCGTCTTCAGCGGCCGGATTTCCTCAGAGGTTTTATTAA    634

BSNT_05604___    635 AAGCGGCCAAAATCGGCGTGTCGATTGTCATTTCCAAATCGGCCCCGACG    684
                     ||||.||.||||||||||||||||||||||||||.||||||||.||||||
RBAM_033880__    635 AAGCCGCAAAAATCGGCGTGTCGATTGTCATTTCAAAATCGGCGCCGACG    684

BSNT_05604___    685 GAGCTTGCGATTCAAATGGCTGAAGAATTGAATATCACAGCGATTGGATT    734
                     |||||.|||.|.||||||||.|||||..||||.||.||.|||||.||.||
RBAM_033880__    685 GAGCTCGCGCTGCAAATGGCGGAAGAGCTGAACATAACCGCGATAGGTTT    734

BSNT_05604___    735 TGTCAGAAACGGATCATTTAATGTATATACACACCCTGAGAGAATCAGGG    784
                     |||||||||||||||||||||.|||||.|||||.|||||       |.||
RBAM_033880__    735 TGTCAGAAACGGATCATTTAACGTATACACACATCCTGA-------ACGG    777

BSNT_05604___    785 G-------ATAG    789
                     |       ||||
RBAM_033880__    778 GTTGAACAATAG    789


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05604 and RBAM_033880

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
