Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05598 and RBAM_033840

See DNA alignment / Visit BSNT_05598 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:05
# Commandline: needle
#    -asequence pep-align/BSNT_05598___csbD.1.9828.seq
#    -bsequence pep-align/RBAM_033840___csbD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05598___csbD-RBAM_033840___csbD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05598___csbD-RBAM_033840___csbD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05598___csbD
# 2: RBAM_033840___csbD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 63
# Identity:      41/63 (65.1%)
# Similarity:    51/63 (81.0%)
# Gaps:           2/63 ( 3.2%)
# Score: 218.0
# 
#
#=======================================

BSNT_05598___      1 MGNDS-VKDKMKGGFNKAKGEVKDKAGDMADRTDMQAEGKKDKAKGEIQK     49
                     |..|: :|||:|||.||.|||.||||||||:::|::||||||||||.:||
RBAM_033840__      1 MSQDNGLKDKVKGGMNKMKGEAKDKAGDMANKSDLKAEGKKDKAKGSLQK     50

BSNT_05598___     50 DIGKAKDKFSDKD     62
                     .:||.|||.||. 
RBAM_033840__     51 GVGKTKDKLSDD-     62


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.