Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05598 and RBAM_033840

See Amino acid alignment / Visit BSNT_05598 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:05
# Commandline: needle
#    -asequence dna-align/BSNT_05598___csbD.1.9828.seq
#    -bsequence dna-align/RBAM_033840___csbD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05598___csbD-RBAM_033840___csbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05598___csbD-RBAM_033840___csbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05598___csbD
# 2: RBAM_033840___csbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 192
# Identity:     137/192 (71.4%)
# Similarity:   137/192 (71.4%)
# Gaps:           6/192 ( 3.1%)
# Score: 457.5
# 
#
#=======================================

BSNT_05598___      1 ATGGGTAACGATA---GTGTAAAAGACAAAATGAAGGGCGGCTTCAATAA     47
                     |||.||.|.||||   ||.|||||||||||.|.||.||||||.|.||.||
RBAM_033840__      1 ATGAGTCAAGATAACGGTTTAAAAGACAAAGTAAAAGGCGGCATGAACAA     50

BSNT_05598___     48 AGCCAAAGGAGAAGTGAAGGATAAAGCCGGAGATATGGCTGACAGAACGG     97
                     |...|||||.||||..|||||.|||||.||.||.|||||..|||...|.|
RBAM_033840__     51 AATGAAAGGGGAAGCAAAGGACAAAGCAGGCGACATGGCAAACAAGTCCG    100

BSNT_05598___     98 ACATGCAGGCTGAAGGCAAAAAAGATAAGGCAAAAGGCGAAATCCAAAAG    147
                     ||.|..|.||.|||||.||||||||.||.||.||||||....|.||||||
RBAM_033840__    101 ACTTAAAAGCGGAAGGTAAAAAAGACAAAGCGAAAGGCAGCCTGCAAAAG    150

BSNT_05598___    148 GATATCGGGAAAGCCAAGGATAAATTTTCAGATAAAGATTAA    189
                     |.|.||||.|||.|.||.||||||  .|||| |.|.||||||
RBAM_033840__    151 GGTGTCGGCAAAACGAAAGATAAA--CTCAG-TGATGATTAA    189


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