Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05533 and RBAM_033470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence pep-align/BSNT_05533___ywqD.1.9828.seq
# -bsequence pep-align/RBAM_033470___ywqD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05533___ywqD-RBAM_033470___ywqD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05533___ywqD-RBAM_033470___ywqD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05533___ywqD
# 2: RBAM_033470___ywqD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 237
# Identity: 155/237 (65.4%)
# Similarity: 187/237 (78.9%)
# Gaps: 17/237 ( 7.2%)
# Score: 786.0
#
#
#=======================================
BSNT_05533___ 1 ---------MRRNVIAMTEPKSLNSEQYRTIRTNIEFASVDRQMKSVMIT 41
.:|:||||:||||:||||||||||||||:|||.::||::||
RBAM_033470__ 1 MLTRKKDKPGKRSVIAMSEPKSINSEQYRTIRTNIEFSSVDTEVKSLLIT 50
BSNT_05533___ 42 SACPGEGKSTTAANLAVVFAQQGKKVLLIDADLRKPTVHTAFFLENTVGL 91
||.|.||||||||||||||||||||||||||||||||||..|.|:|..||
RBAM_033470__ 51 SAGPEEGKSTTAANLAVVFAQQGKKVLLIDADLRKPTVHFTFKLDNGTGL 100
BSNT_05533___ 92 TSVLLKKSSMEQAVQASNEKHLDVLTSGPIPPNPAELLSSKWMKELAYEA 141
||:|||:...::||..::|.:||:|||||||||||||||:..||:|..||
RBAM_033470__ 101 TSLLLKQMPFQKAVLPADEANLDILTSGPIPPNPAELLSTGAMKDLLSEA 150
BSNT_05533___ 142 CAAYDMVIFDTPPILAVADAQILGNVADGSVLVISSGKTEKEQAAKAKEA 191
...||.||.||||:|||||.:|||:..||:::|||||||:||:|||||||
RBAM_033470__ 151 AEVYDKVILDTPPVLAVADTKILGSYTDGAIMVISSGKTDKEKAAKAKEA 200
BSNT_05533___ 192 LETCKSKLLGAIMNGKKLSKHSEYGYYGNKDNFMQNK 228
|:.|..|||||:|||||.:|||:|.|||.
RBAM_033470__ 201 LDYCPCKLLGAVMNGKKQTKHSDYAYYGQ-------- 229
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