Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05533 and RBAM_033470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence dna-align/BSNT_05533___ywqD.1.9828.seq
# -bsequence dna-align/RBAM_033470___ywqD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05533___ywqD-RBAM_033470___ywqD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05533___ywqD-RBAM_033470___ywqD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05533___ywqD
# 2: RBAM_033470___ywqD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 748
# Identity: 482/748 (64.4%)
# Similarity: 482/748 (64.4%)
# Gaps: 119/748 (15.9%)
# Score: 1596.5
#
#
#=======================================
BSNT_05533___ 1 -----------------------ATGCGGA----GAAATGTCATTGCAAT 23
|..|||| |||..||.|||||.||
RBAM_033470__ 1 ATGTTGACGCGTAAAAAAGACAAACCCGGAAAACGAAGCGTGATTGCGAT 50
BSNT_05533___ 24 GACAGAGCCGAAATCCTTGAACTCTGAACAATATCGGACGATTCGCACGA 73
|.|.||||||||||||.|.|||||.|||||||||||.|||||.|||||.|
RBAM_033470__ 51 GTCTGAGCCGAAATCCATCAACTCAGAACAATATCGCACGATCCGCACAA 100
BSNT_05533___ 74 ATATAGAATTTGCTTCAGTGG--ACCGCCAGATGAAATCAGTGATGATCA 121
|.||.||||||.||||.||.| ||.| ||.||||.||..|..||||||
RBAM_033470__ 101 ACATTGAATTTTCTTCCGTTGATACGG--AGGTGAAGTCCCTTTTGATCA 148
BSNT_05533___ 122 CATCGGCTTGTCCCGGAGAAGGAAAATCAACAACGGCCGCCAACCTGGCT 171
||||.||..||||.|.||||||||||||.|||||.||.||||||||.||.
RBAM_033470__ 149 CATCCGCCGGTCCGGAAGAAGGAAAATCGACAACCGCGGCCAACCTTGCC 198
BSNT_05533___ 172 GTCGTATTCGCCCAGCAGGGAAAAAAAGTGCTCCTGATTGATGCTGATTT 221
||||||||.||.||||||||.|||||||||||..|.||||||||.|||.|
RBAM_033470__ 199 GTCGTATTTGCACAGCAGGGGAAAAAAGTGCTTTTAATTGATGCGGATCT 248
BSNT_05533___ 222 GCGAAAACCAACAGTACATACGGCCTTTTTTCTTGAAAAT-----ACGG- 265
|||.|||||.||.||.|| |||...|||.|||.| ||||
RBAM_033470__ 249 GCGCAAACCGACGGTTCA-------TTTCACCTTCAAATTGGATAACGGA 291
BSNT_05533___ 266 -TTGGCTTAACATCTGTTTTATTAA---AGA-----------AAAGC--- 297
..||.|||||.||..|..|.|||| ||| |||||
RBAM_033470__ 292 ACCGGATTAACGTCACTGCTGTTAAAACAGATGCCGTTTCAGAAAGCCGT 341
BSNT_05533___ 298 TCTATGGAGCAGGCTGTACAGGCATCGAATGAA--AAACATCTTGACGTG 345
.|| ||.||||| ||||| |||| ||.||..|.
RBAM_033470__ 342 CCT-----GCCGGCTG------------ATGAAGCAAAC--CTGGATATT 372
BSNT_05533___ 346 CTGACGAGCGGCCCGATCCCGCCAAACCCGGCCGAGCTTCTCTCCTCGAA 395
.|.||||||||.|||||||||||.||.|||||.||||||.|.||..|| .
RBAM_033470__ 373 TTAACGAGCGGGCCGATCCCGCCCAATCCGGCGGAGCTTTTATCGACG-G 421
BSNT_05533___ 396 GTG-GATGAAGGAGCTTGCATACGAAGCGTGTGCGGCA---TATGATATG 441
||| .|||||.||.|||...|..||||| .||.|.| |||||||.|
RBAM_033470__ 422 GTGCCATGAAAGATCTTCTGTCAGAAGC---CGCCGAAGTTTATGATAAG 468
BSNT_05533___ 442 GTCATTTTTGATACGCCGCCTATTCTTGCCGTAGCAGATGCACAGATTTT 491
||.|||||.||||||||.||..||.|.||||||||.|||.|..|.||.||
RBAM_033470__ 469 GTGATTTTGGATACGCCTCCCGTTTTGGCCGTAGCCGATACGAAAATATT 518
BSNT_05533___ 492 AGGCAACGTGGCAGACGGTTCTGTTCTGGTTATTTCAAGCGGGAAAACAG 541
|||||.|....|.|||||..|..||.||||.||.||||||||||||||.|
RBAM_033470__ 519 AGGCAGCTACACTGACGGGGCCATTATGGTGATCTCAAGCGGGAAAACGG 568
BSNT_05533___ 542 AAAAAGAACAAGCCGCAAAAGCGAAAGAGGCGCTTGA-AACGTGCAAAAG 590
|.||.|||.||||.||.||.||||||||.|||||.|| .|| |||....|
RBAM_033470__ 569 ACAAGGAAAAAGCGGCCAAGGCGAAAGAAGCGCTCGATTAC-TGCCCGTG 617
BSNT_05533___ 591 CAAGCTTCTTGGGGCGATTATGAACGGCAAAAAGCTTTCGAAGCACTCTG 640
||||||.||||||||..|.||||||||.||.||.|...||||.|||||.|
RBAM_033470__ 618 CAAGCTCCTTGGGGCCGTGATGAACGGGAAGAAACAAACGAAACACTCGG 667
BSNT_05533___ 641 AATACGGATATTACGGA-AACAAGGACAATTTCATGCAAAATAAATAA 687
|.||||..||||||||| ||.||
RBAM_033470__ 668 ACTACGCCTATTACGGACAATAA------------------------- 690
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