Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05489 and RBAM_033180

See DNA alignment / Visit BSNT_05489 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:59
# Commandline: needle
#    -asequence pep-align/BSNT_05489___alsR.1.9828.seq
#    -bsequence pep-align/RBAM_033180___alsR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05489___alsR-RBAM_033180___alsR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05489___alsR-RBAM_033180___alsR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05489___alsR
# 2: RBAM_033180___alsR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 305
# Identity:     231/305 (75.7%)
# Similarity:   269/305 (88.2%)
# Gaps:           6/305 ( 2.0%)
# Score: 1214.0
# 
#
#=======================================

BSNT_05489___      1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKR     50
                     ||||||||||||||||||||||.|||||||||||||||||:|||||||||
RBAM_033180__      1 MELRHLQYFIAVAEELHFGKAALRLNMTQPPLSQQIKQLEKEVGVTLLKR     50

BSNT_05489___     51 TKRFVELTAAGEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGS    100
                     |||.|||:||||.||.|.|.|:.:|.:.||:||||||||.|.||:|||||
RBAM_033180__     51 TKRVVELSAAGESFLKHSRNAIEEIDKAIEMAQRTARGELGRLVVGFVGS    100

BSNT_05489___    101 ATYEFLPPIVREYRKKFPCVKIELREISSSRQQEELLKGNIDIGILHPPL    150
                     |||||||||:||:|:|||.||::||||||.||||||||||||||||||||
RBAM_033180__    101 ATYEFLPPIIREFREKFPSVKLDLREISSFRQQEELLKGNIDIGILHPPL    150

BSNT_05489___    151 QHTALHIETAQSSPCVLALPKQHPLTSKESITIEDLRDEPIITVAKEAWP    200
                     ||:|||:|..|||||:||||||||||:|::|.|:||::|||||::||.||
RBAM_033180__    151 QHSALHMEKVQSSPCILALPKQHPLTAKQTIDIQDLKNEPIITLSKETWP    200

BSNT_05489___    201 TLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGMTFVPSSAKKLF    250
                     |||::|:.:||||||:|.||||||||||||||||||||:|||||||||||
RBAM_033180__    201 TLYLEFVNYCEQAGFKPKIVQEATEYQMVIGLVSAGIGVTFVPSSAKKLF    250

BSNT_05489___    251 NLDVTYRKMDQIQLNAEWVIAYRKDNHNPLIKHFIHISNCQQT---RTKE    297
                     ||:|.||.::|:||.|||||||||||.||::|||:.|.|.:|.   ..||
RBAM_033180__    251 NLEVAYRGINQVQLTAEWVIAYRKDNQNPILKHFLDIMNKRQALLQADKE    300

BSNT_05489___    298 SDAGT    302
                     :.   
RBAM_033180__    301 NA---    302


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