Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05489 and RBAM_033180

See Amino acid alignment / Visit BSNT_05489 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:59
# Commandline: needle
#    -asequence dna-align/BSNT_05489___alsR.1.9828.seq
#    -bsequence dna-align/RBAM_033180___alsR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05489___alsR-RBAM_033180___alsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05489___alsR-RBAM_033180___alsR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05489___alsR
# 2: RBAM_033180___alsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 937
# Identity:     682/937 (72.8%)
# Similarity:   682/937 (72.8%)
# Gaps:          56/937 ( 6.0%)
# Score: 2407.5
# 
#
#=======================================

BSNT_05489___      1 ATGGAGCTTCGCCATCTTCAATACTTTATCGCAGTAGCCGAAGAGCTTCA     50
                     |||||||||||||||||||||||||||||.||.||.||||||||.|||||
RBAM_033180__      1 ATGGAGCTTCGCCATCTTCAATACTTTATTGCCGTTGCCGAAGAACTTCA     50

BSNT_05489___     51 TTTCGGAAAGGCTGCCCGGCGGCTGAACATGACGCAGCCTCCTCTCAGCC    100
                     ||||||.||.|||||.|..|||.|.||.|||||.|||||.||||||||||
RBAM_033180__     51 TTTCGGCAAAGCTGCGCTTCGGTTAAATATGACACAGCCGCCTCTCAGCC    100

BSNT_05489___    101 AGCAGATCAAACAGCTGGAGGAAGAAGTCGGAGTTACGCTTCTGAAA-AG    149
                     ||||||||||||||||.|||.|.||||||||.||.|| |||.|.||| .|
RBAM_033180__    101 AGCAGATCAAACAGCTTGAGAAGGAAGTCGGCGTGAC-CTTATTAAAGCG    149

BSNT_05489___    150 GACAAAACGATTTGTCGAGCTTACCGCAGCAGGAGAAATCTTTTTAAATC    199
                     .||.|||||..||||.||||||.|.||.||.|||||||..||||||||.|
RBAM_033180__    150 CACGAAACGGGTTGTAGAGCTTTCAGCTGCCGGAGAAAGTTTTTTAAAAC    199

BSNT_05489___    200 ATTGCCGCATGGC-CTTGATGCAAATCGGAC-AAGGAATTGAACTGGCAC    247
                     |..||.|.|..|| .|.||.| |||| .||| |||..||||||.||||.|
RBAM_033180__    200 ACAGCAGAAACGCGATCGAAG-AAAT-AGACAAAGCGATTGAAATGGCGC    247

BSNT_05489___    248 AGCGGACGGCCCGCGGCGAGCAAGGCCTTCTCGTAATCGGTTTTGTCGGA    297
                     ||.|.|||||.||.||.||||..||||..||.||..|||||||||||||.
RBAM_033180__    248 AGAGAACGGCGCGGGGAGAGCTCGGCCGCCTTGTCGTCGGTTTTGTCGGC    297

BSNT_05489___    298 TCAGCTACATATGAATTTCTGCCGCCGATTGTCCGGGAATATCGTAAAAA    347
                     ||.||.|||||||||||||||||||||||..|.|||||||..||..||||
RBAM_033180__    298 TCGGCCACATATGAATTTCTGCCGCCGATCATTCGGGAATTCCGCGAAAA    347

BSNT_05489___    348 ATTCCCATGTGTGAAAATAGAACTGCGTGAAATATCCTCGTCTAGGCAGC    397
                     ||||||.|..||.||..|.||.|||||||||||.||.||.|..||.||||
RBAM_033180__    348 ATTCCCCTCCGTCAAGCTTGATCTGCGTGAAATTTCTTCTTTCAGACAGC    397

BSNT_05489___    398 AAGAGGAGCTACTAAAGGGCAACATTGATATTGGTATACTTCATCCTCCC    447
                     |.||.||.||.||.|||||.|||||||||||.||.||.||||||||.||.
RBAM_033180__    398 AGGAAGAACTTCTGAAGGGGAACATTGATATCGGCATCCTTCATCCGCCT    447

BSNT_05489___    448 TTACAGCATACAGCTTTACATATCGAAACCGCCCAAAGCAGCCCTTGTGT    497
                     |||||||||.|.||.||||||||.||||..|..||.|||||.||.||..|
RBAM_033180__    448 TTACAGCATTCCGCGTTACATATGGAAAAGGTGCAGAGCAGTCCGTGCAT    497

BSNT_05489___    498 TTTAGCTTTGCCTAAGCAACACCCATTGACTTCTAAGGAATCAATTACG-    546
                     |.|.||||||||.|||||.|||||..|.||..||||..|..||||  || 
RBAM_033180__    498 TCTGGCTTTGCCGAAGCAGCACCCGCTTACCGCTAAACAGACAAT--CGA    545

BSNT_05489___    547 -ATTGAGGATTTAAGAGATGAACCAATTAT--TACTGTTGCTAAAGAAGC    593
                      |||.|||||||||.|.|||||||.|||||  .|||||  |.||||||.|
RBAM_033180__    546 CATTCAGGATTTAAAAAATGAACCGATTATCACACTGT--CGAAAGAAAC    593

BSNT_05489___    594 ATGGCCTACTCTATACATGGATTTTATTCAGTTCTGTGAACAAGCGGGCT    643
                     ||||||.|||.|||||.|.||.|||.|..|.|.|||.||.||.|||||||
RBAM_033180__    594 ATGGCCGACTTTATACCTAGAGTTTGTAAACTACTGCGAGCAGGCGGGCT    643

BSNT_05489___    644 TCAGACCCAACATTGTCCAGGAAGCCACAGAATATCAAATGGTGATTGGT    693
                     |||.|||.||.||.||.||||||||.||.||.||||||||||||||.||.
RBAM_033180__    644 TCAAACCGAAAATCGTTCAGGAAGCGACGGAGTATCAAATGGTGATCGGA    693

BSNT_05489___    694 TTAGTCAGCGCCGGAATTGGTATGACATTTGTTCCTTCCTCAGCCAAAAA    743
                     ||.||.||.|||||.||.|||.||||.||.||.|||||.||.||.|||||
RBAM_033180__    694 TTGGTTAGTGCCGGCATCGGTGTGACCTTCGTGCCTTCTTCTGCTAAAAA    743

BSNT_05489___    744 ATTATTTAATTTGGATGTTACTTATCG----AAAAATGGACCAAATACAG    789
                     ..|.||||||.|.||.||..|.|||||    |..|||    ||..|.|||
RBAM_033180__    744 GCTGTTTAATCTCGAAGTCGCCTATCGCGGCATTAAT----CAGGTGCAG    789

BSNT_05489___    790 CTTAATGCCGAATGGGTTATCGCTTACCGCAAAGACAATCATAATCCGCT    839
                     ||.|..|||||||||||.||.||.||||||||.||.|||||.||||||.|
RBAM_033180__    790 CTCACGGCCGAATGGGTCATTGCCTACCGCAAGGATAATCAAAATCCGAT    839

BSNT_05489___    840 TATAAAGCATTTTATTCATATT-----TCAA-----------ATTGTCA-    872
                     ..|.||.||||||.|..|||||     |.||           |||| || 
RBAM_033180__    840 CCTGAAACATTTTCTGGATATTATGAATAAACGCCAGGCTTTATTG-CAG    888

BSNT_05489___    873 GCAGACAAGAACTAAAGAGAGTGATGCAGGTACATGA    909
                     ||.||       |||.||.|   |||||  ||.    
RBAM_033180__    889 GCGGA-------TAAGGAAA---ATGCA--TAA----    909


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05489 and RBAM_033180

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
