Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05456 and RBAM_032900

See DNA alignment / Visit BSNT_05456 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:55
# Commandline: needle
#    -asequence pep-align/BSNT_05456___lytD.1.9828.seq
#    -bsequence pep-align/RBAM_032900___lytD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05456___lytD-RBAM_032900___lytD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05456___lytD-RBAM_032900___lytD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05456___lytD
# 2: RBAM_032900___lytD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity:     534/883 (60.5%)
# Similarity:   673/883 (76.2%)
# Gaps:           5/883 ( 0.6%)
# Score: 2774.0
# 
#
#=======================================

BSNT_05456___      1 MKKRLIAPMLLSAASLAFFAISGSAQAAAYTDYSLYQVEPSNTFSTESQA     50
                     ||||.:|||||||..|.|..::..|: |||:|||:|::|....|::|::|
RBAM_032900__      1 MKKRFVAPMLLSAVFLVFCTLTQPAE-AAYSDYSVYELETKQQFASENEA     49

BSNT_05456___     51 SQAVAKLEKDTGWDASYQASGTT-TTYQISASGIHSESEAKAILSGLAKQ     99
                     .||.|||:|||||.|..:.:|.| .||||||||:|.|::||.:|....||
RBAM_032900__     50 LQAAAKLKKDTGWQADAKKAGNTPLTYQISASGLHDETDAKTVLKDFTKQ     99

BSNT_05456___    100 TSITGTSSPVGSKQPYVTISSGAISGEKQANTVLAKLKQETGVAGAVKAY    149
                     |.::||.|..||||||||::||.:|.|:|...:||:|.::|||.||||..
RBAM_032900__    100 TGVSGTYSASGSKQPYVTVTSGVLSDERQTKNLLAELTKKTGVTGAVKPA    149

BSNT_05456___    150 GAAQPYMNVMTSDIADETKVKALIQNLAKQTGIKSSYQPITHTVSVTTIR    199
                     |..||||.|:|:::|.|...|||.|.|.||||:|:||:.|....:...|:
RBAM_032900__    150 GTKQPYMQVVTAEMAAEADAKALSQALTKQTGVKASYRQIKRETARFQIQ    199

BSNT_05456___    200 SGTIVGDSRAAQIKKAFQKESGLKASLKETVKGQAYYTFTTAAISGEANA    249
                     ||||.||.:||||:..||||:||:||||.|.|.....|.|.:.||...:|
RBAM_032900__    200 SGTISGDQKAAQIQTDFQKETGLQASLKVTAKASPNITVTASDISNANDA    249

BSNT_05456___    250 KTLLQQLKQSTGITGSYKSINQKTTVESYNVQSAYFKGLNTVKDAISQIK    299
                     ..|.:||:|.||:.|:.:...|..|...|||||.||.|::.|::||:|||
RBAM_032900__    250 AGLAKQLQQKTGVKGNVQKYAQSKTATVYNVQSGYFNGVSAVQNAITQIK    299

BSNT_05456___    300 KNTGVSGSYQQVGKSTSYTVNMKGITKQQLQKVDTFFKKKKWHYTSSSVK    349
                     ||||||.|||:.||..:|||.|.|:|.:|||.|..||||||||..:|.||
RBAM_032900__    300 KNTGVSVSYQKAGKKNNYTVAMSGLTAKQLQSVQAFFKKKKWHCDASPVK    349

BSNT_05456___    350 KTTTSAAYQITTAKMLGEQQANKAAAFFAQKKVKATKTAAGSTAENQYQL    399
                     ||.:.:.|:| ||..|...:|::|.|||.|:.||..:||||.||||:|||
RBAM_032900__    350 KTASVSVYRI-TAGQLTAAKADQAEAFFRQQHVKTARTAAGKTAENEYQL    398

BSNT_05456___    400 ISEETSDQAKVTKGLNILKKNQLSASAKSVKKQIADTFKITTESLFDQTK    449
                     :|::|:||:|:.||||:|...:|:|..|::.||...|:::|||||.|..|
RBAM_032900__    399 LSQQTADQSKIKKGLNLLAGYKLTAITKTISKQTDTTYQVTTESLLDTAK    448

BSNT_05456___    450 VNQALTFFKSNHISAASQKTGQTAASSYQITTEAIISQEEIDRVLTFFKQ    499
                     :|::|.|||...:||::||||:.|.:.::|.|..::.:|:||||..||||
RBAM_032900__    449 INRSLDFFKGKKVSASAQKTGEAAYTQFRIETAPLLKKEDIDRVTAFFKQ    498

BSNT_05456___    500 NHIAVTTSKTGQTAYTQYKIVTTQLSSKTALNNGLTYLKSKSVTPSYTTK    549
                     |..|.|..:||:|...||.|.|...||||.||..:::..:|.:...||::
RBAM_032900__    499 NKAAGTVKETGKTGSAQYVIKTETFSSKTVLNKSMSFFSAKQLQAGYTSE    548

BSNT_05456___    550 SNTLYKISVNEQFTGNDTAAAASTKLKQLYGWTSSIVKIKNGPQIMKTNY    599
                     |:.:|::.:.:||||..:|.|||.|||:|||||.:|:|||||||||.|||
RBAM_032900__    549 SHPVYELRIRDQFTGAQSADAASQKLKKLYGWTMAILKIKNGPQIMNTNY    598

BSNT_05456___    600 NLSLRDMVQKQMTVSPQTDGAAYVSLTYINTATSTVTADVLNIRSTPEVS    649
                     |:||.|||:||||||||||.|||.||||||||:.||||||||:|||||||
RBAM_032900__    599 NISLADMVKKQMTVSPQTDAAAYASLTYINTASGTVTADVLNVRSTPEVS    648

BSNT_05456___    650 PTNVIGQFKKGDKVKIIGQINGWAKINLGWRNASSDEVVQYVDPNNFTRD    699
                     ..|:|||.||||||.|.||.|||||:::||||||||||.|||:|.:|.:|
RBAM_032900__    649 SGNIIGQLKKGDKVSITGQTNGWAKLSMGWRNASSDEVGQYVNPAHFAQD    698

BSNT_05456___    700 SKYYFQFLKLSQTAGLSVTEVNQKVLAGKGILTGRAKAFIDAANQYSINE    749
                     ||||||||||||||||:.:|:|||||..||||||:.:|||.||.:|||||
RBAM_032900__    699 SKYYFQFLKLSQTAGLNASELNQKVLVNKGILTGKGQAFITAAGKYSINE    748

BSNT_05456___    750 LYLISHALLETGNGTSALANGLTYNGKKVYNMYGIGAYDSNPNYYGAKYA    799
                     :|||||||||||||||.||||:.||||||||||||||||||||||||:||
RBAM_032900__    749 VYLISHALLETGNGTSELANGIMYNGKKVYNMYGIGAYDSNPNYYGAQYA    798

BSNT_05456___    800 YEQGWFTPEAAIIGGAKFIGSSYIHNTAYNQDTLYKMRWSATATHQYATD    849
                     |.||||||||||||||:|||:|||||.:|.||||||||||..|.||||||
RBAM_032900__    799 YNQGWFTPEAAIIGGAQFIGASYIHNPSYEQDTLYKMRWSPAAAHQYATD    848

BSNT_05456___    850 IGWAYKQVNRMYSLYSLLDGYTLYFDVPEYR--    880
                     |||||||||||||||||||.||||:|||.|.  
RBAM_032900__    849 IGWAYKQVNRMYSLYSLLDDYTLYYDVPVYMKV    881


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_05456 and RBAM_032900

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
