Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05456 and RBAM_032900
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:56
# Commandline: needle
# -asequence dna-align/BSNT_05456___lytD.1.9828.seq
# -bsequence dna-align/RBAM_032900___lytD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05456___lytD-RBAM_032900___lytD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05456___lytD-RBAM_032900___lytD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05456___lytD
# 2: RBAM_032900___lytD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2886
# Identity: 1837/2886 (63.7%)
# Similarity: 1837/2886 (63.7%)
# Gaps: 483/2886 (16.7%)
# Score: 5349.5
#
#
#=======================================
BSNT_05456___ 1 ATGAAAAAGAGACTAATCGCACCTATGCTTCTATCCGCCGCGTCCCTTGC 50
||||||||||||.|..|.|||||||||.|..|.|||||||..|.|||||
RBAM_032900__ 1 ATGAAAAAGAGATTCGTTGCACCTATGTTATTGTCCGCCGTTTTCCTTG- 49
BSNT_05456___ 51 CTTTTTTGC-------CATATCTGGTTCTGCCC----AGGCAGCCGCGTA 89
|.|||||| || |.|||| || |||||.||
RBAM_032900__ 50 -TCTTTTGCACCCTTACA---------CAGCCCGCTGAG---GCCGCATA 86
BSNT_05456___ 90 TACCGACTACTCACTATATCAAGTAGAGCCGTCGAATACG---------- 129
.|.|||||||||..|.|| .|||| |.||| |||
RBAM_032900__ 87 CAGCGACTACTCCGTTTA------CGAGC--TGGAA-ACGAAGCAGCAAT 127
BSNT_05456___ 130 ----TTCAGTACAGAA--AGCCAAGCCTCACAAGCTGTCGCCAAACTGGA 173
|||.| |||| ||.| ||.| |||||.|..||.|||.||.|
RBAM_032900__ 128 TTGCTTCTG---AGAACGAGGC--GCTT--CAAGCGGCAGCGAAATTGAA 170
BSNT_05456___ 174 AAAAGATACTGGCTGGGATGCATCCTATCAGGCTTCAGGCACAACAACG- 222
|||.|||||.||.||| ||||| |.|.||| ||.||.|
RBAM_032900__ 171 AAAGGATACGGGATGG------------CAGGC-TGACGCA-AAGAAAGC 206
BSNT_05456___ 223 ----------------ACCTACCAAATTTCCGCCTCAGGCATTCATAGCG 256
||.||.|||||.||.||.||||||.|.||....|
RBAM_032900__ 207 CGGAAATACGCCGCTCACTTATCAAATCTCAGCTTCAGGCTTACACGATG 256
BSNT_05456___ 257 AATCAGAAGCGAAAGCAATACTGAGCGGACTCGCCAAACAGA-------- 298
||.|.||.||||||.|..|.||||..|...|..|.||.||||
RBAM_032900__ 257 AAACGGATGCGAAAACCGTGCTGAAAGATTTTACGAAGCAGACGGGCGTG 306
BSNT_05456___ 299 --CATCGATTACAGGAACGTCAAGTCCTGTTGGAAGCAAACAGCCATATG 346
|..|..|||||| || |||| .||||||||||||||.||.|
RBAM_032900__ 307 TCCGGCACTTACAG---CG-CAAG------CGGAAGCAAACAGCCGTACG 346
BSNT_05456___ 347 TCACCATCTCGTCAGGTGCCATCTC-------CGGAGAAAAACAGGCCAA 389
|.|||.||.|.|||||.|.|.|.|| ||| |||.|.||
RBAM_032900__ 347 TGACCGTCACATCAGGCGTCCTATCAGACGAGCGG-------CAGACGAA 389
BSNT_05456___ 390 CACTGTCCTAGCAAAGCTGA--AACAGGAGACGGGAGTGGCTGGCGCTGT 437
.|.|.|.||.||..|.|||| ||.| |.|||||.|||.|.|||||.||
RBAM_032900__ 390 AAATCTTCTTGCCGAACTGACGAAAA--AAACGGGCGTGACCGGCGCCGT 437
BSNT_05456___ 438 AAAAGCTTACGGAG-CAGCTCAGCCCTATATGAACGTCATGACATCAGAC 486
.||||...|||.| ||...|||||.||.|||.|.|||.||||..|.||.
RBAM_032900__ 438 -CAAGCCGGCGGGGACAAAACAGCCGTACATGCAGGTCGTGACTGCTGAG 486
BSNT_05456___ 487 ATTGCTGATGA----GA--CAAAAGTCAAGGCGCTTATC-CAGAACC--T 527
||.||.|..|| || ||||| |||| || |..||.| |
RBAM_032900__ 487 ATGGCGGCCGAAGCGGACGCAAAA------GCGC---TCTCGCAAGCGTT 527
BSNT_05456___ 528 GGCCAAGCAAACGGG-GATTAAAAGC-TCGTA---TCAGCCCATCACAC- 571
|.|.|||||.||||| | |.||||| ||.|| |||| ||||.||
RBAM_032900__ 528 GACGAAGCAGACGGGCG--TGAAAGCGTCATACCGTCAG---ATCAAACG 572
BSNT_05456___ 572 ----ACA---CGGTGTCTG-TCACAACCATTCGTTCTGGCACAATCGTGG 613
||| ||||.||.| || ||| ||.||.||||||...|
RBAM_032900__ 573 GGAAACAGCCCGGTTTCAGATC-CAA--------TCAGGAACAATCTCCG 613
BSNT_05456___ 614 GAGA-CAGCAGAGCAGCGCAGATCAAAAAAGCCTTCCAAAAGGAATCGGG 662
|.|| || .|.|||.||.||.|||.|||..|..||.|||||||||.|.||
RBAM_032900__ 614 GCGATCA-AAAAGCCGCTCAAATCCAAACTGATTTTCAAAAGGAAACAGG 662
BSNT_05456___ 663 GCTGAAGGCATCATTAAAGGAAACAGTGAAAGGACAAGCCTATTAT-ACG 711
..||.||||.||..|.||.|..|| |..|||||.||..||.|.||| ||.
RBAM_032900__ 663 ATTGCAGGCGTCGCTGAAAGTCAC-GGCAAAGGCCAGTCCGAATATCACC 711
BSNT_05456___ 712 TTCACAACTGCTGCCATTTCAGGTGAAGCGAATGCCAA-GACTCTATTGC 760
.|.|||.|..|||.||||||| |||||.|| || |||
RBAM_032900__ 712 GTGACAGCCTCTGACATTTCA---------AATGCAAATGA------TGC 746
BSNT_05456___ 761 AGCAGCT-----GAAACAG----AGC-----ACTGGCATCACAGGCA--G 794
.||||.| ||||||| ||| ||.|||.|||.|||.| |
RBAM_032900__ 747 GGCAGGTTTAGCGAAACAGCTGCAGCAGAAAACGGGCGTCAAAGGGAATG 796
BSNT_05456___ 795 CT-ACAAGT----CCATCAATCAAAA-AACAACCGTTGAGTCATACAATG 838
.| |.|||| ||| ||.||||| |.||||||| .|||||.|
RBAM_032900__ 797 TTCAAAAGTATGCCCA--AAGCAAAACAGCAACCGT------GTACAACG 838
BSNT_05456___ 839 TCCAATCAGCTTATTTCAAAGGCCTGAATA----CAGTAAAGGACGCCAT 884
|.||.||||..|||||.|| |.||.|| |.|||.|..|.||.||
RBAM_032900__ 839 TGCAGTCAGGATATTTTAA----CGGAGTAAGCGCCGTACAAAATGCTAT 884
BSNT_05456___ 885 CAGCCAGATCAAGAAAAACACCGGTGTATCCGGCAGTTATCAA----CAG 930
||.|||.||||||||.||.||.|||||...||..||.|||||| |.|
RBAM_032900__ 885 CACCCAAATCAAGAAGAATACGGGTGTGAGCGTAAGCTATCAAAAAGCCG 934
BSNT_05456___ 931 GTTGGAAAAAGCACATCATATACCGTGAATATGAAGGGGA--------TA 972
|...|||||| || || ||.||.||....||| ||.||| ||
RBAM_032900__ 935 GCAAGAAAAA-CA-AT--TACACGGTCGCGATG-AGCGGACTGACGGCTA 979
BSNT_05456___ 973 ACAAAACAGCAGCTCCAAAAAGTAGATACTTTCTTTAAAAAGAAAAAATG 1022
|||||||.||||..||..|..||||||||||||||||||||||
RBAM_032900__ 980 -------AGCAGCTGCAAAGTGTTCAAGCTTTCTTTAAAAAGAAAAAATG 1022
BSNT_05456___ 1023 GCATT-ATACGTCATCCAGC--GTCAAAAAAACAACAAC-GTCTGCGGCT 1068
||||| ..||| |||| || ||||||||.|||.||.| ||.| |.|.|
RBAM_032900__ 1023 GCATTGCGACG-CATC--GCCTGTCAAAAAGACAGCATCAGTGT-CCGTT 1068
BSNT_05456___ 1069 TACCAAATCACGACAGCCAAGATGTTAGGCGA-------GCAGCAA--GC 1109
||.|..||||||.||| ||| | ||.|||| ||
RBAM_032900__ 1069 TATCGGATCACGGCAG-----------GGC-AGCTTACCGCTGCAAAGGC 1106
BSNT_05456___ 1110 AAACAAAGCAGCAGCCTTCTTT--GCTCAGAAAAAAGTAAAAGCCACAAA 1157
|.|..|||| |.||.|.|.||| || |||.|..|.|||||..|..|||.
RBAM_032900__ 1107 AGATCAAGC-GGAGGCGTTTTTCCGC-CAGCAGCATGTAAAGACGGCAAG 1154
BSNT_05456___ 1158 AACAGCAGCTGGATCAACAGCAGAAAATCAATATCAGCT--CATCTCAGA 1205
||||||.||.|||..||||||||||||..|||||||||| ..||||||.
RBAM_032900__ 1155 AACAGCGGCGGGAAAAACAGCAGAAAACGAATATCAGCTGCTTTCTCAGC 1204
BSNT_05456___ 1206 AGAAACATCAGATCAAGCAAAAGTCACAAAGGGTTTGAACATATTAAAGA 1255
|| ||..||||.||..|.||..|.|.|||.||.|||
RBAM_032900__ 1205 AG--ACGGCAGACCAGTCGAAGATAAAAAAAGGATTG------------- 1239
BSNT_05456___ 1256 AAAATCAGCTGAGTGCTTCTGCGAAAT-------CCGTCA----AAAAAC 1294
||||.|||| || |.||.|| |||.|| ||||||
RBAM_032900__ 1240 --AATCTGCTG---GC----GGGATATAAACTGACCGCCATTACAAAAAC 1280
BSNT_05456___ 1295 -AAAT---AGCTGAC-------ACGTTTAAAATCACAACCGAATCTCTGT 1333
|.|| |||.||| ||||...||.|||||||||||||.|||.
RBAM_032900__ 1281 GATATCCAAGCAGACGGACACAACGTACCAAGTCACAACCGAATCACTGC 1330
BSNT_05456___ 1334 TTGACCAAACG--AAAG-TCAATCAGGCACT-CACGTTTTTCAAATCGAA 1379
||| |.||| |||| ||||||...|.|| .|| |||||||||..|||
RBAM_032900__ 1331 TTG---ATACGGCAAAGATCAATCGTTCGCTGGAC-TTTTTCAAAGGGAA 1376
BSNT_05456___ 1380 TCATATATCAGCAGCAAGC-CAGAAAACCGGTCAGACAGCTGCGAGCAGC 1428
..|..||||.||..| .|| ||||||||.|||.| ||||||
RBAM_032900__ 1377 AAAAGTATCCGCCTC-CGCGCAGAAAACAGGTGA----------AGCAGC 1415
BSNT_05456___ 1429 -TAT---CAAATCACAACTGAA-----------GCTATCATCAGCCAAGA 1463
||| |||.|||.||.|||| ||| |.|..|| ||
RBAM_032900__ 1416 GTATACACAATTCAGAATTGAAACGGCACCGCTGCT-TAAAAAG----GA 1460
BSNT_05456___ 1464 AGAGATTGACCGCGTTTTAACATTTTTCAAACAAAATCATATC-GCAGTC 1512
|||.|||||||||||.....|.||||||||.||||| ||.|.| ||.|.|
RBAM_032900__ 1461 AGACATTGACCGCGTGACTGCTTTTTTCAAGCAAAA-CAAAGCGGCCGGC 1509
BSNT_05456___ 1513 AC---------AACATCAAAAACAGGCCAGACAGCATATACACAATA--- 1550
|| .||....|||||.||| |.|.||||.||
RBAM_032900__ 1510 ACTGTGAAGGAGACGGGGAAAACCGGC---------TCTGCACAGTACGT 1550
BSNT_05456___ 1551 ---CAAAATCGTGACAACACAGCTCAGCAGCAAAACAGCATTGAATAATG 1597
|||||.||..||| .|||||||.|||||.|..||.|||||..
RBAM_032900__ 1551 CATCAAAACCGAAACA------TTCAGCAGTAAAACCGTTTTAAATAAAA 1594
BSNT_05456___ 1598 GGTTAACCTATCTTAAATCGAA--AAGTGTAACCCCTAGCTATACAACGA 1645
|..|.|.||.|.|.|...|.|| ||.|..|..|| .|||||||.|...
RBAM_032900__ 1595 GCATGAGCTTTTTCAGCGCCAAACAATTACAGGCC--GGCTATACGAGTG 1642
BSNT_05456___ 1646 AAAGCAATACGCTTTATAAAATCAGCGTAAAT----GAGCAGTTCACAG- 1690
|||||.||.||.|||||.||.||.|| || ||.||.|||||.|
RBAM_032900__ 1643 AAAGCCATCCGGTTTATGAACTCCGC----ATTCGCGATCAATTCACGGG 1688
BSNT_05456___ 1691 ---GCAATGATACAGCTGCTGCGGCAT--CAACGAAGCTAAAACAATTAT 1735
|||.| ||||.|..||.||.| ||| |||||.|||.|..|.|
RBAM_032900__ 1689 AGCGCAGT----CAGCGGACGCCGCCTCCCAA--AAGCTGAAAAAGCTGT 1732
BSNT_05456___ 1736 ACGGATGGACATCAT--CTATCGTGAAGATCAAAAACGGTCCGCAAATCA 1783
|||||||||| .|| ||||..||||.||.||||||||.||||||||||
RBAM_032900__ 1733 ACGGATGGAC--GATGGCTATTTTGAAAATAAAAAACGGACCGCAAATCA 1780
BSNT_05456___ 1784 TGAAAACAAATTACAATCTCTCGCTTCGTGATATGGTCCAAAAACAAATG 1833
||||.||.||||||||..|||||||....|||||||||.|||||||||||
RBAM_032900__ 1781 TGAATACCAATTACAACATCTCGCTGGCAGATATGGTCAAAAAACAAATG 1830
BSNT_05456___ 1834 ACAGTAAGTCCGCAAACAGACGGAGCGGCTTACGTATCGCTCACGTACAT 1883
|||||.||.|||||.||.||.|..||||||||.|.||||||.||||||||
RBAM_032900__ 1831 ACAGTCAGCCCGCAGACTGATGCCGCGGCTTATGCATCGCTTACGTACAT 1880
BSNT_05456___ 1884 TAATACAGCAACATCAACCGTTACGGCTGACGTACTAAATATCCGGTCAA 1933
.|||||.||..|...|||.||.||.||.|||||.||.||..|||||||||
RBAM_032900__ 1881 CAATACGGCCTCCGGAACTGTCACAGCCGACGTCCTGAACGTCCGGTCAA 1930
BSNT_05456___ 1934 CGCCGGAAGTCAGC-CCGACAA-ACGTGATCGGCCAATTTAAAAAAGGCG 1981
|.|||||||||||| |||.||| | |.|||||.||.||.||||||||||
RBAM_032900__ 1931 CCCCGGAAGTCAGCTCCGGCAATA--TTATCGGGCAGTTGAAAAAAGGCG 1978
BSNT_05456___ 1982 ATAAAGTGAAAATCATCGGACAGATAAACGGCTGGGCTAAGATCAATTTG 2031
|||||||.|..||||..||.||||.||||||||||||.||..|||...||
RBAM_032900__ 1979 ATAAAGTCAGCATCACAGGCCAGACAAACGGCTGGGCCAAACTCAGCATG 2028
BSNT_05456___ 2032 GGCTGGCGAAACGCAAGCAGTGATGAAGTAGTTCAATACGTGGATCCAAA 2081
||||||.|||||||.||||||||.|||||.|..||.||.||..||||...
RBAM_032900__ 2029 GGCTGGAGAAACGCCAGCAGTGACGAAGTCGGGCAGTATGTCAATCCGGC 2078
BSNT_05456___ 2082 TAACTTTAC-CAGAGACAGCAAATACTACTTCCAATTTCTCAAGCTGTCA 2130
|.||||..| || |||||||||.||.|||||.||||||||.|||||.||.
RBAM_032900__ 2079 TCACTTCGCACA-AGACAGCAAGTATTACTTTCAATTTCTGAAGCTCTCT 2127
BSNT_05456___ 2131 CAGACAGCGGGCCT-----CAGCGTTACTGAGGTCAATCAGAAAGTGCTT 2175
||||||||.||.|| ||.||..|||| |||||.||||||||
RBAM_032900__ 2128 CAGACAGCCGGACTGAACGCATCGGAACTG-----AATCAAAAAGTGCT- 2171
BSNT_05456___ 2176 GCGGG----TAAAGGCATCCTGACAGGGAGAG--CAAAGGCATTTAT--- 2216
|| ||||||.||.||||||||||.|| ||| ||.|||||
RBAM_032900__ 2172 ---GGTCAATAAAGGAATACTGACAGGGAAAGGCCAA--GCCTTTATTAC 2216
BSNT_05456___ 2217 CGATGCCGCCAATCAATATAGCATCAACGAACTGTATTTAATCTCACACG 2266
.|.|||||.|| ||||.||||||||.|||.|||||||.||.||.||.|
RBAM_032900__ 2217 AGCTGCCGGCA---AATACAGCATCAATGAAGTGTATTTGATTTCGCATG 2263
BSNT_05456___ 2267 CTCTTCTGGAAACAGGAAACGGGACATCCG-CCTTAGCCAATGG-ATTAA 2314
||.|.||.|||||.||.||.||.||.||.| .||| ||.||.|| ||| |
RBAM_032900__ 2264 CTTTGCTTGAAACGGGCAATGGCACGTCAGAGCTT-GCGAACGGCATT-A 2311
BSNT_05456___ 2315 CCTATAACGGAAAAAAAGTATACAACATGTATGGAATTGGAGCATACGAC 2364
..|||||.||.|||||.||.|||||||||||.||.||.||.||.||.|||
RBAM_032900__ 2312 TGTATAATGGTAAAAAGGTTTACAACATGTACGGCATCGGGGCTTATGAC 2361
BSNT_05456___ 2365 AGCAATCCGAATTACTACGGAGCCAAATATGCGTACGAGCAGGGCTGGTT 2414
|||||.||||||||||||||.||..||||.|||||..|.||.||||||||
RBAM_032900__ 2362 AGCAACCCGAATTACTACGGCGCACAATACGCGTATAATCAAGGCTGGTT 2411
BSNT_05456___ 2415 CACACCAGAAGCGGCCATTATCGGCGGAGCTAAATTCATAGGCTCATCGT 2464
.||.||.|||||.||.||||||||||||||..||||.||.||..|.||.|
RBAM_032900__ 2412 TACTCCGGAAGCCGCGATTATCGGCGGAGCCCAATTTATCGGTGCGTCTT 2461
BSNT_05456___ 2465 ATATCCACAACACAGCTTACAATCAGGACACACTGTACAAAATGAGATGG 2514
||||.|||||..|..|.|||.|.|||||.||.|||||.||||||||||||
RBAM_032900__ 2462 ATATTCACAATCCTTCATACGAGCAGGATACGCTGTATAAAATGAGATGG 2511
BSNT_05456___ 2515 TCAGCTACAGCGACACATCAATACGCAACAGACATCGGCTGGGCGTACAA 2564
||..|..|.|||.|.|||||.||.||.|||||.||||||||||||||.||
RBAM_032900__ 2512 TCTCCAGCCGCGGCCCATCAGTATGCGACAGATATCGGCTGGGCGTATAA 2561
BSNT_05456___ 2565 ACAAGTAAACCGCATGTACAGCCTGTATTCATTGCTGGACGGCTATACAC 2614
.||.||||||||||||||||||.|.||.|||.|||||||.|.||||||.|
RBAM_032900__ 2562 GCAGGTAAACCGCATGTACAGCTTATACTCACTGCTGGATGACTATACGC 2611
BSNT_05456___ 2615 TTTACTTTGATGTTCC--GGAATATCG-----ATAA 2643
||||||.||||||||| .|.|||| | ||||
RBAM_032900__ 2612 TTTACTATGATGTTCCCGTGTATAT-GAAAGTATAA 2646
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