Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05383 and RBAM_032540
See
DNA alignment /
Visit
BSNT_05383 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence pep-align/BSNT_05383___yviE.1.9828.seq
# -bsequence pep-align/RBAM_032540___yviE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05383___yviE-RBAM_032540___yviE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05383___yviE-RBAM_032540___yviE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05383___yviE
# 2: RBAM_032540___yviE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 196
# Identity: 89/196 (45.4%)
# Similarity: 118/196 (60.2%)
# Gaps: 14/196 ( 7.1%)
# Score: 372.0
#
#
#=======================================
BSNT_05383___ 1 MQIPRLIMHSVQGKIGLTTTPASLKMEQPQADLEIEQPSAEMEISVTPGK 50
:||||:.||..|||:|.....::||||.||||||||.||:.|..||.|
RBAM_032540__ 1 --MPRLIIDSVPAKIGITFQKEEIEMEQPPADLEIEQPPAELNIESTPTK 48
BSNT_05383___ 51 LTIDQTQAWEELDRKHVFKRIEEAAQQGHEDVMKGIARTAEEGDELMRIE 100
||||||:|||.|:.|...|...||||:|.|...:.||:|..||.|:..||
RBAM_032540__ 49 LTIDQTRAWENLNLKSFEKLNAEAAQKGAEACSEFIAKTVREGKEMAAIE 98
BSNT_05383___ 101 NK-GNPIASQAR--RNSEMHQIQLGE--NYAPSLSRVKIQYTPSQLDVQI 145
.| ||.:|.||. |..: ..|| ::.|:...|.|...||:|.:.|
RBAM_032540__ 99 KKTGNVMARQAADVRPPD----PFGEFSDFLPAQFLVDIDCIPSKLTIDI 144
BSNT_05383___ 146 TPRKPVIQAEPHKPIVEYTPGNVKVDMLQYPDLNIDVEYPKESPEK 191
..|||.|:|..:||:..||||.|::||:|.|.:.|.|: .::.|
RBAM_032540__ 145 EARKPSIEAAVNKPVWNYTPGKVQIDMMQDPKVTISVD--DDNAE- 187
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.