Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05383 and RBAM_032540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence dna-align/BSNT_05383___yviE.1.9828.seq
# -bsequence dna-align/RBAM_032540___yviE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05383___yviE-RBAM_032540___yviE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05383___yviE-RBAM_032540___yviE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05383___yviE
# 2: RBAM_032540___yviE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 660
# Identity: 356/660 (53.9%)
# Similarity: 356/660 (53.9%)
# Gaps: 180/660 (27.3%)
# Score: 861.0
#
#
#=======================================
BSNT_05383___ 1 ATGCAGATTCCCAGATTGATTATGCATAGTGTTCAAGGAAAAATTGGTTT 50
||.||.|||||||||||..|.|||||.|..|..|||||.|||.|
RBAM_032540__ 1 ------ATGCCGAGATTGATTATTGACAGTGTGCCTGCTAAAATCGGTAT 44
BSNT_05383___ 51 AAC-------AACGACGCCTGCCAGCTTAAAA-----ATGGAGCAGCCTC 88
||| ||.||.| ||| |||||.|||||.|
RBAM_032540__ 45 AACCTTTCAAAAGGAAG------------AAATCGAGATGGAACAGCCGC 82
BSNT_05383___ 89 AAGCTGATCTAGAGATCGAACAGCCG-----AGTGCGGAA-ATGGAAATA 132
..|||||.||.||.|||||.|||||| ||.||.||| ||.||||..
RBAM_032540__ 83 CCGCTGACCTGGAAATCGAGCAGCCGCCGGCAGAGCTGAACATTGAAAGC 132
BSNT_05383___ 133 TCGGTGACACCTGGAAAACTCACGATTGACCAGACACAAGCATGGGAAGA 182
.||..||| .|||||.||||||||||||||....||.|||| |||
RBAM_032540__ 133 ACGCCGAC------CAAACTGACGATTGACCAGACGAGGGCGTGGG-AGA 175
BSNT_05383___ 183 ATTAGA--CAGAAAGCATGTTTTCAAGAGAATTGAA----GAAGCCGCCC 226
|.|.|| |..|||.|| |||.||.|| .|||| ||||||||||
RBAM_032540__ 176 ACTTGAATCTCAAATCA---TTTGAAAAG--CTGAACGCTGAAGCCGCCC 220
BSNT_05383___ 227 AACAAGG-GCATGAGGATGTAATGAAGGGAATAGCGCGCACGGCAGAAGA 275
|..|||| || |||| || |.||||
RBAM_032540__ 221 AGAAAGGCGC-----------------GGAA------GC-CTGCAG---- 242
BSNT_05383___ 276 AGGCGACGAGCTTATGAGAATTGAAAATA-------AAGGGAACCCAATC 318
||||.||||...| ||||.| |||||||...|||.
RBAM_032540__ 243 ------CGAGTTTATCGCA----AAAACAGTCAGGGAAGGGAAGGAAATG 282
BSNT_05383___ 319 GC-----TTCACAAGCAAGGAGGAACTCTGA--------AATGCACCAAA 355
|| |..|.|||.||...||.|.|.||| .|.|||.||.|
RBAM_032540__ 283 GCGGCTATCGAAAAGAAAACGGGCAATGTGATGGCCCGGCAGGCAGCAGA 332
BSNT_05383___ 356 T--------------TCAATTAGGCGAAAATTATGCTCCTTCTCTATCTA 391
| ||.|||.|||| ||||..||..||| |||..||.
RBAM_032540__ 333 TGTCAGGCCGCCCGATCCATTCGGCG--AATTCAGCGACTT-TCTGCCTG 379
BSNT_05383___ 392 GG---------GTGAAAATACAATATACTCCGTCACAGCTT--GATGTTC 430
.| ||..|.||..|.|..|.|||.|||.||||| || ||.
RBAM_032540__ 380 CGCAGTTTCTCGTCGACATTGACTGCATTCCTTCAAAGCTTACGA--TTG 427
BSNT_05383___ 431 AGATT-ACGCCGCGAAAGCCTGTTATTCAGGCTGAGCCG--CATAAGCCA 477
|.||| |.||| ||.||.|||...|||.|.|| ||||| .||||.||
RBAM_032540__ 428 ATATTGAAGCC-CGCAAACCTTCAATTGAAGC--AGCCGTCAATAAACC- 473
BSNT_05383___ 478 ATTGT-TG--AATATACGCCAGGAAATGTTAAGGTTGACATGCTCCAATA 524
||| || |.||||||||.||.||.|||.||.||||.|||.|.|||.|
RBAM_032540__ 474 --TGTATGGAATTATACGCCGGGGAAAGTTCAGATTGATATGATGCAAGA 521
BSNT_05383___ 525 CCCT--------GATTTAAATATAGATGTAGAATACCCGAAAGAATCACC 566
|||| ||||| ...|.||||..||..||.| |||||.|
RBAM_032540__ 522 CCCTAAGGTGACGATTT--CGGTTGATGATGACAACGC---AGAATAA-- 564
BSNT_05383___ 567 CGAAAAGTAA 576
RBAM_032540__ 564 ---------- 564
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