Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05368 and RBAM_032430

See DNA alignment / Visit BSNT_05368 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:49
# Commandline: needle
#    -asequence pep-align/BSNT_05368___yvjA.1.9828.seq
#    -bsequence pep-align/RBAM_032430___yvjA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05368___yvjA-RBAM_032430___yvjA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05368___yvjA-RBAM_032430___yvjA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05368___yvjA
# 2: RBAM_032430___yvjA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 283
# Identity:     230/283 (81.3%)
# Similarity:   261/283 (92.2%)
# Gaps:           2/283 ( 0.7%)
# Score: 1180.0
# 
#
#=======================================

BSNT_05368___      1 MMDV-RNKTLWILRDYVYILVGAAITAVSFNVFLLPNKIAAGGVSGISTI     49
                      ||| .||.|.:::||:||::|||||.:.||||||||:||||||||||||
RBAM_032430__      1 -MDVNHNKPLRLIKDYIYIMIGAAITGIVFNVFLLPNRIAAGGVSGISTI     49

BSNT_05368___     50 LQSYGFEAAYVQWIINIPLFIAGVILLGGKFGLKTLAGSVFLPLVVFLTR     99
                     |:::|||.|||||||||||||||||:||||||:|||.||:.|||.|:|||
RBAM_032430__     50 LETFGFEPAYVQWIINIPLFIAGVIILGGKFGMKTLVGSIVLPLAVYLTR     99

BSNT_05368___    100 DIQPATHHELLAAIFGGVGIGIGIGIVYLGKGSTGGTALAAQIIHKYSGL    149
                     |:..||.||||||||||||||.||||||||||||||||||.||||||:||
RBAM_032430__    100 DLPAATTHELLAAIFGGVGIGTGIGIVYLGKGSTGGTALAGQIIHKYTGL    149

BSNT_05368___    150 SLGKCLAIIDGMIVVTAMIVFNIEQGLYAMLGVYVSSKTIDVVQVGFNRS    199
                     |||.||||:||:||::||:||.:||||||||||::|||||||||||||||
RBAM_032430__    150 SLGTCLAIMDGLIVLSAMLVFGVEQGLYAMLGVFISSKTIDVVQVGFNRS    199

BSNT_05368___    200 KMALIITKQEQAVKEAVLQKIDRGVTKISAVGGYTDDDRPILMCVVGQTE    249
                     |||||||:.|:||:.||.::|||||||||||||||:.|||||||||||||
RBAM_032430__    200 KMALIITQHEEAVRSAVFKEIDRGVTKISAVGGYTEHDRPILMCVVGQTE    249

BSNT_05368___    250 FTKLKQIVKQIDESAFVIVADASEVLGEGFKRA    282
                     |||||||||||||||||||||||||||||||||
RBAM_032430__    250 FTKLKQIVKQIDESAFVIVADASEVLGEGFKRA    282


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.