Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05368 and RBAM_032430
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:49
# Commandline: needle
# -asequence dna-align/BSNT_05368___yvjA.1.9828.seq
# -bsequence dna-align/RBAM_032430___yvjA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05368___yvjA-RBAM_032430___yvjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05368___yvjA-RBAM_032430___yvjA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05368___yvjA
# 2: RBAM_032430___yvjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 877
# Identity: 640/877 (73.0%)
# Similarity: 640/877 (73.0%)
# Gaps: 56/877 ( 6.4%)
# Score: 2316.5
#
#
#=======================================
BSNT_05368___ 1 ATGATGGACGT-----ACGGAATAAAACATTGTGGATTTTGCGG------ 39
|||||.|| || ||||| ||.|
RBAM_032430__ 1 ---ATGGATGTGAATCAC--AATAA---------------GCCGCTCCGT 30
BSNT_05368___ 40 ---------GATTATGTATACAT-ATTAGTAGGAGCAGCGATTACGG--- 76
||||||.|.||||| ||.| |.||.||.||||||||||
RBAM_032430__ 31 CTGATCAAAGATTATATCTACATCATGA-TCGGCGCGGCGATTACGGGGA 79
BSNT_05368___ 77 CCGTGTCCTTTAATGTATTTTTGCTTCCGAACAAGATTGCCGCCGGCGGT 126
.|||| |||||.|||||||||||.||||||...||.||.||.||.||.
RBAM_032430__ 80 TCGTG---TTTAACGTATTTTTGCTGCCGAACCGTATAGCAGCGGGGGGA 126
BSNT_05368___ 127 GTCAGCGGGATCAGTACGATTTTACAATCATATGGTTTTGAAGCAGCGTA 176
||.|||||||||||.||.||||||.||.|.|.||||||||||.|.||.||
RBAM_032430__ 127 GTAAGCGGGATCAGCACCATTTTAGAAACGTTTGGTTTTGAACCGGCTTA 176
BSNT_05368___ 177 TGTACAGTGGATTATTAATATCCCTTTATTTATTGCTGGCGTCATTTTGC 226
.||.||||||||||||||.||||||||.|||||.||.||.||.||..|.|
RBAM_032430__ 177 CGTGCAGTGGATTATTAACATCCCTTTGTTTATCGCCGGAGTGATCATTC 226
BSNT_05368___ 227 TCGGCGGGAAATTTGGGCTAAAGACGCTTGCTGGTTCTGTGTTTTTGCCG 276
||||||||||.||.||..|.|||||.||.|..|||||..|..||.|||||
RBAM_032430__ 227 TCGGCGGGAAGTTCGGAATGAAGACACTGGTCGGTTCCATCGTTCTGCCG 276
BSNT_05368___ 277 CTAGTTGTGTTTTTGACAAGGGATATTCAGCCCGCCACTCATCATGAACT 326
||.|..||.|.|||.|||||.|||.|.|...||||.||....||||||||
RBAM_032430__ 277 CTCGCCGTCTATTTAACAAGAGATCTGCCTGCCGCGACGACCCATGAACT 326
BSNT_05368___ 327 CTTGGCGGCGATTTTTGGCGGTGTCGGGATAGGTATCGGAATTGGTATTG 376
..|||||||||||||.||.||.||||||||.||.|..|||||.||.||.|
RBAM_032430__ 327 GCTGGCGGCGATTTTCGGAGGCGTCGGGATCGGAACGGGAATCGGCATCG 376
BSNT_05368___ 377 TGTACTTAGGGAAAGGTTCGACGGGAGGAACAGCCTTGGCTGCACAGATC 426
||||..|.||.|||||.||.|||||.|||||.||..||||.|..||||||
RBAM_032430__ 377 TGTATCTCGGCAAAGGCTCCACGGGGGGAACGGCTCTGGCGGGGCAGATC 426
BSNT_05368___ 427 ATTCATAAGTACTCCGGTCTGTCATTGGGGAAGTGTCTCGCCATCATTGA 476
|||||.||.|||.|.||.|||||..||||.|.|||.||.||||||||.||
RBAM_032430__ 427 ATTCACAAATACACGGGGCTGTCGCTGGGAACGTGCCTTGCCATCATGGA 476
BSNT_05368___ 477 CGGAATGATCGTTGTTACGGCTATGATTGTATTTAATA-TTGAGCAAGGC 525
||||.|.||.||..|.|..||.|||.|.|| |||...| |.|||||.||.
RBAM_032430__ 477 CGGATTAATTGTGCTGAGCGCGATGCTCGT-TTTCGGAGTGGAGCAGGGA 525
BSNT_05368___ 526 TTATATGCCATGCTTGGCGTCTATGTGTCCAGCAAAACCATTGATGTTGT 575
.|.|||||.|||||.||.||.|.|.|.||.||||||||.||||||||.||
RBAM_032430__ 526 CTGTATGCGATGCTCGGGGTATTTATTTCAAGCAAAACGATTGATGTCGT 575
BSNT_05368___ 576 GCAAGTCGGCTTTAATCGTTCAAAAATGGCGCTCATCATTACAAAGCAGG 625
|||.|||||.||.||.||.||.||||||||..|.||||||||..||||.|
RBAM_032430__ 576 GCAGGTCGGGTTCAACCGCTCCAAAATGGCTTTAATCATTACGCAGCATG 625
BSNT_05368___ 626 AGCAGGCTGTCAAGGA--GGCTGT-CTTACAGAAGATTGACAGAGGCGTG 672
|..|.||.|||| || |||||| .|||.|||| ||.|||||.||.|||
RBAM_032430__ 626 AAGAAGCCGTCA--GATCGGCTGTGTTTAAAGAA-ATCGACAGGGGTGTG 672
BSNT_05368___ 673 ACAAAAATCTCTGCAGTCGGCGGATATACTGATGATGACCGTCCGATTTT 722
||.||.||.||.|||||||||||.|||||.||..|||||||||||||.||
RBAM_032430__ 673 ACGAAGATTTCCGCAGTCGGCGGGTATACGGAACATGACCGTCCGATCTT 722
BSNT_05368___ 723 AATGTGCGTGGTTGGGCAAACTGAATTCACCAAATTGAAACAAATCGTCA 772
||||||.||.||.||.||.||.||||||||.|||.|||||||||||||||
RBAM_032430__ 723 AATGTGTGTCGTCGGCCAGACCGAATTCACAAAACTGAAACAAATCGTCA 772
BSNT_05368___ 773 AACAGATTGATGAGTCAGCTTTTGTGATTGTAGCAGACGCGAGCGAGGTG 822
|||||||||||||||||||.|||||.|||||.||||||||.|||||||||
RBAM_032430__ 773 AACAGATTGATGAGTCAGCCTTTGTCATTGTCGCAGACGCAAGCGAGGTG 822
BSNT_05368___ 823 CTGGGCGAGGGTTTCAAACGCGCTTAA 849
||.||||||||||||||||||||.|||
RBAM_032430__ 823 CTCGGCGAGGGTTTCAAACGCGCGTAA 849
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